Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells
Daniloski, Zharko, Jordan, Tristan X., Wessels, Hans-Hermann, Hoagland, Daisy A., Kasela, Silva, Legut, Mateusz, Maniatis, Silas, Mimitou, Eleni P., Lu, Lu, Geller, Evan, Danziger, Oded, Rosenberg, Brad R., Phatnani, Hemali, Smibert, Peter, Lappalainen, Tuuli, tenOever, Benjamin R., Sanjana, Neville E.
Published in Cell (07.01.2021)
Published in Cell (07.01.2021)
Get full text
Journal Article
Web Resource
Relationships between gut microbiota, plasma metabolites, and metabolic syndrome traits in the METSIM cohort
Org, Elin, Blum, Yuna, Kasela, Silva, Mehrabian, Margarete, Kuusisto, Johanna, Kangas, Antti J, Soininen, Pasi, Wang, Zeneng, Ala-Korpela, Mika, Hazen, Stanley L, Laakso, Markku, Lusis, Aldons J
Published in Genome Biology (13.04.2017)
Published in Genome Biology (13.04.2017)
Get full text
Journal Article
Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes
Xue, Angli, Wu, Yang, Zhu, Zhihong, Zhang, Futao, Kemper, Kathryn E, Zheng, Zhili, Yengo, Loic, Lloyd-Jones, Luke R, Sidorenko, Julia, Wu, Yeda, McRae, Allan F, Visscher, Peter M, Zeng, Jian, Yang, Jian
Published in Nature communications (27.07.2018)
Published in Nature communications (27.07.2018)
Get full text
Journal Article
Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood
Qi, Ting, Wu, Yang, Zeng, Jian, Zhang, Futao, Xue, Angli, Jiang, Longda, Zhu, Zhihong, Kemper, Kathryn, Yengo, Loic, Zheng, Zhili, Marioni, Riccardo E, Montgomery, Grant W, Deary, Ian J, Wray, Naomi R, Visscher, Peter M, McRae, Allan F, Yang, Jian
Published in Nature communications (11.06.2018)
Published in Nature communications (11.06.2018)
Get full text
Journal Article
Integrative approach identifies SLC6A20 and CXCR6 as putative causal genes for the COVID-19 GWAS signal in the 3p21.31 locus
Kasela, Silva, Daniloski, Zharko, Bollepalli, Sailalitha, Jordan, Tristan X, tenOever, Benjamin R, Sanjana, Neville E, Lappalainen, Tuuli
Published in Genome Biology (23.08.2021)
Published in Genome Biology (23.08.2021)
Get full text
Journal Article
A genetics-led approach defines the drug target landscape of 30 immune-related traits
Fang, Hai, De Wolf, Hans, Knezevic, Bogdan, Burnham, Katie L, Osgood, Julie, Sanniti, Anna, Lledó Lara, Alicia, Kasela, Silva, De Cesco, Stephane, Wegner, Jörg K, Handunnetthi, Lahiru, McCann, Fiona E, Chen, Liye, Sekine, Takuya, Brennan, Paul E, Marsden, Brian D, Damerell, David, O'Callaghan, Chris A, Bountra, Chas, Bowness, Paul, Sundström, Yvonne, Milani, Lili, Berg, Louise, Göhlmann, Hinrich W, Peeters, Pieter J, Fairfax, Benjamin P, Sundström, Michael, Knight, Julian C
Published in Nature genetics (01.07.2019)
Published in Nature genetics (01.07.2019)
Get full text
Journal Article
Genomic Insights into Myasthenia Gravis Identify Distinct Immunological Mechanisms in Early and Late Onset Disease
Handunnetthi, Lahiru, Knezevic, Bogdan, Kasela, Silva, Burnham, Katie L., Milani, Lili, Irani, Sarosh R., Fang, Hai, Knight, Julian C.
Published in Annals of neurology (01.09.2021)
Published in Annals of neurology (01.09.2021)
Get full text
Journal Article
Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells
Kasela, Silva, Kisand, Kai, Tserel, Liina, Kaleviste, Epp, Remm, Anu, Fischer, Krista, Esko, Tõnu, Westra, Harm-Jan, Fairfax, Benjamin P, Makino, Seiko, Knight, Julian C, Franke, Lude, Metspalu, Andres, Peterson, Pärt, Milani, Lili
Published in PLoS genetics (01.03.2017)
Published in PLoS genetics (01.03.2017)
Get full text
Journal Article
Evaluation of noninvasive biospecimens for transcriptome studies
Martorella, Molly, Kasela, Silva, Garcia-Flores, Renee, Gokden, Alper, Castel, Stephane E, Lappalainen, Tuuli
Published in BMC genomics (19.12.2023)
Published in BMC genomics (19.12.2023)
Get full text
Journal Article
Canonical correlation analysis for multi-omics: Application to cross-cohort analysis
Jiang, Min-Zhi, Aguet, François, Ardlie, Kristin, Chen, Jiawen, Cornell, Elaine, Cruz, Dan, Durda, Peter, Gabriel, Stacey B, Gerszten, Robert E, Guo, Xiuqing, Johnson, Craig W, Kasela, Silva, Lange, Leslie A, Lappalainen, Tuuli, Liu, Yongmei, Reiner, Alex P, Smith, Josh, Sofer, Tamar, Taylor, Kent D, Tracy, Russell P, VanDenBerg, David J, Wilson, James G, Rich, Stephen S, Rotter, Jerome I, Love, Michael I, Raffield, Laura M, Li, Yun
Published in PLoS genetics (22.05.2023)
Published in PLoS genetics (22.05.2023)
Get full text
Journal Article
Genetic regulation of spermine oxidase activity and cancer risk: a Mendelian randomization study
Fadista, João, Yakimov, Victor, Võsa, Urmo, Hansen, Christine S, Kasela, Silva, Skotte, Line, Geller, Frank, Courraud, Julie, Esko, Tõnu, Kukuškina, Viktorija, Buil, Alfonso, Melbye, Mads, Werge, Thomas M, Hougaard, David M, Milani, Lili, Bybjerg-Grauholm, Jonas, Cohen, Arieh S, Feenstra, Bjarke
Published in Scientific reports (31.08.2021)
Published in Scientific reports (31.08.2021)
Get full text
Journal Article
Pulmonary emphysema subtypes defined by unsupervised machine learning on CT scans
Angelini, Elsa D, Yang, Jie, Balte, Pallavi P, Hoffman, Eric A, Manichaikul, Ani W, Sun, Yifei, Shen, Wei, Austin, John H M, Allen, Norrina B, Bleecker, Eugene R, Bowler, Russell, Cho, Michael H, Cooper, Christopher S, Couper, David, Dransfield, Mark T, Garcia, Christine Kim, Han, MeiLan K, Hansel, Nadia N, Hughes, Emlyn, Jacobs, David R, Kasela, Silva, Kaufman, Joel Daniel, Kim, John Shinn, Lappalainen, Tuuli, Lima, Joao, Malinsky, Daniel, Martinez, Fernando J, Oelsner, Elizabeth C, Ortega, Victor E, Paine, Robert, Post, Wendy, Pottinger, Tess D, Prince, Martin R, Rich, Stephen S, Silverman, Edwin K, Smith, Benjamin M, Swift, Andrew J, Watson, Karol E, Woodruff, Prescott G, Laine, Andrew F, Barr, R Graham
Published in Thorax (01.11.2023)
Published in Thorax (01.11.2023)
Get full text
Journal Article
Cell Specific eQTL Analysis without Sorting Cells
Westra, Harm-Jan, Arends, Danny, Esko, Tõnu, Peters, Marjolein J, Schurmann, Claudia, Schramm, Katharina, Kettunen, Johannes, Yaghootkar, Hanieh, Fairfax, Benjamin P, Andiappan, Anand Kumar, Li, Yang, Fu, Jingyuan, Karjalainen, Juha, Platteel, Mathieu, Visschedijk, Marijn, Weersma, Rinse K, Kasela, Silva, Milani, Lili, Tserel, Liina, Peterson, Pärt, Reinmaa, Eva, Hofman, Albert, Uitterlinden, André G, Rivadeneira, Fernando, Homuth, Georg, Petersmann, Astrid, Lorbeer, Roberto, Prokisch, Holger, Meitinger, Thomas, Herder, Christian, Roden, Michael, Grallert, Harald, Ripatti, Samuli, Perola, Markus, Wood, Andrew R, Melzer, David, Ferrucci, Luigi, Singleton, Andrew B, Hernandez, Dena G, Knight, Julian C, Melchiotti, Rossella, Lee, Bernett, Poidinger, Michael, Zolezzi, Francesca, Larbi, Anis, Wang, De Yun, van den Berg, Leonard H, Veldink, Jan H, Rotzschke, Olaf, Makino, Seiko, Salomaa, Veikko, Strauch, Konstantin, Völker, Uwe, van Meurs, Joyce B J, Metspalu, Andres, Wijmenga, Cisca, Jansen, Ritsert C, Franke, Lude
Published in PLoS genetics (01.05.2015)
Published in PLoS genetics (01.05.2015)
Get full text
Journal Article
Whole genome sequence analysis of pulmonary function and COPD in 19,996 multi-ethnic participants
Zhao, Xutong, Qiao, Dandi, Yang, Chaojie, Kasela, Silva, Kim, Wonji, Ma, Yanlin, Shrine, Nick, Batini, Chiara, Sofer, Tamar, Taliun, Sarah A Gagliano, Sakornsakolpat, Phuwanat, Balte, Pallavi P, Prokopenko, Dmitry, Yu, Bing, Lange, Leslie A, Dupuis, Josée, Cade, Brian E, Lee, Jiwon, Gharib, Sina A, Daya, Michelle, Laurie, Cecelia A, Ruczinski, Ingo, Cupples, L Adrienne, Loehr, Laura R, Bartz, Traci M, Morrison, Alanna C, Psaty, Bruce M, Vasan, Ramachandran S, Wilson, James G, Taylor, Kent D, Durda, Peter, Johnson, W Craig, Cornell, Elaine, Guo, Xiuqing, Liu, Yongmei, Tracy, Russell P, Ardlie, Kristin G, Aguet, François, VanDenBerg, David J, Papanicolaou, George J, Rotter, Jerome I, Barnes, Kathleen C, Jain, Deepti, Nickerson, Deborah A, Muzny, Donna M, Metcalf, Ginger A, Doddapaneni, Harshavardhan, Dugan-Perez, Shannon, Gupta, Namrata, Gabriel, Stacey, Rich, Stephen S, O'Connor, George T, Redline, Susan, Reed, Robert M, Laurie, Cathy C, Daviglus, Martha L, Preudhomme, Liana K, Burkart, Kristin M, Kaplan, Robert C, Wain, Louise V, Tobin, Martin D, London, Stephanie J, Lappalainen, Tuuli, Oelsner, Elizabeth C, Abecasis, Goncalo R, Silverman, Edwin K, Barr, R Graham, Cho, Michael H, Manichaikul, Ani
Published in Nature communications (14.10.2020)
Published in Nature communications (14.10.2020)
Get full text
Journal Article
Transcription factor regulation of eQTL activity across individuals and tissues
Flynn, Elise D, Tsu, Athena L, Kasela, Silva, Kim-Hellmuth, Sarah, Aguet, Francois, Ardlie, Kristin G, Bussemaker, Harmen J, Mohammadi, Pejman, Lappalainen, Tuuli
Published in PLoS genetics (31.01.2022)
Published in PLoS genetics (31.01.2022)
Get full text
Journal Article
Genetic and epigenetic regulation of gene expression in fetal and adult human livers
Bonder, Marc Jan, Kasela, Silva, Kals, Mart, Tamm, Riin, Lokk, Kaie, Barragan, Isabel, Buurman, Wim A, Deelen, Patrick, Greve, Jan-Willem, Ivanov, Maxim, Rensen, Sander S, van Vliet-Ostaptchouk, Jana V, Wolfs, Marcel G, Fu, Jingyuan, Hofker, Marten H, Wijmenga, Cisca, Zhernakova, Alexandra, Ingelman-Sundberg, Magnus, Franke, Lude, Milani, Lili
Published in BMC genomics (04.10.2014)
Published in BMC genomics (04.10.2014)
Get full text
Journal Article
Genetic regulators of sputum mucin concentration and their associations with COPD phenotypes
Van Buren, Eric, Radicioni, Giorgia, Lester, Sarah, O'Neal, Wanda K, Dang, Hong, Kasela, Silva, Garudadri, Suresh, Curtis, Jeffrey L, Han, MeiLan K, Krishnan, Jerry A, Wan, Emily S, Silverman, Edwin K, Hastie, Annette, Ortega, Victor E, Lappalainen, Tuuli, Nawijn, Martijn C, Berge, Maarten van den, Christenson, Stephanie A, Li, Yun, Cho, Michael H, Kesimer, Mehmet, Kelada, Samir N P
Published in PLoS genetics (23.06.2023)
Published in PLoS genetics (23.06.2023)
Get full text
Journal Article
A methylation risk score for chronic kidney disease: a HyperGEN study
Jones, Alana C., Patki, Amit, Srinivasasainagendra, Vinodh, Hidalgo, Bertha A., Tiwari, Hemant K., Limdi, Nita A., Armstrong, Nicole D., Chaudhary, Ninad S., Minniefield, Bré, Absher, Devin, Arnett, Donna K., Lange, Leslie A., Lange, Ethan M., Young, Bessie A., Diamantidis, Clarissa J., Rich, Stephen S., Mychaleckyj, Josyf C., Rotter, Jerome I., Taylor, Kent D., Kramer, Holly J., Tracy, Russell P., Durda, Peter, Kasela, Silva, Lappalinen, Tuuli, Liu, Yongmei, Johnson, W. Craig, Van Den Berg, David J., Franceschini, Nora, Liu, Simin, Mouton, Charles P., Bhatti, Parveen, Horvath, Steve, Whitsel, Eric A., Irvin, Marguerite R.
Published in Scientific reports (01.08.2024)
Published in Scientific reports (01.08.2024)
Get full text
Journal Article
Distinct COPD subtypes in former smokers revealed by gene network perturbation analysis
Buschur, Kristina L, Riley, Craig, Saferali, Aabida, Castaldi, Peter, Zhang, Grace, Aguet, Francois, Ardlie, Kristin G, Durda, Peter, Craig Johnson, W, Kasela, Silva, Liu, Yongmei, Manichaikul, Ani, Rich, Stephen S, Rotter, Jerome I, Smith, Josh, Taylor, Kent D, Tracy, Russell P, Lappalainen, Tuuli, Graham Barr, R, Sciurba, Frank, Hersh, Craig P, Benos, Panayiotis V
Published in Respiratory research (25.01.2023)
Published in Respiratory research (25.01.2023)
Get full text
Journal Article