Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility
Lareau, Caleb A, Duarte, Fabiana M, Chew, Jennifer G, Kartha, Vinay K, Burkett, Zach D, Kohlway, Andrew S, Pokholok, Dmitry, Aryee, Martin J, Steemers, Frank J, Lebofsky, Ronald, Buenrostro, Jason D
Published in Nature biotechnology (01.08.2019)
Published in Nature biotechnology (01.08.2019)
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Journal Article
Interrogation of human hematopoiesis at single-cell and single-variant resolution
Ulirsch, Jacob C, Lareau, Caleb A, Bao, Erik L, Ludwig, Leif S, Guo, Michael H, Benner, Christian, Satpathy, Ansuman T, Kartha, Vinay K, Salem, Rany M, Hirschhorn, Joel N, Finucane, Hilary K, Aryee, Martin J, Buenrostro, Jason D, Sankaran, Vijay G
Published in Nature genetics (01.04.2019)
Published in Nature genetics (01.04.2019)
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Journal Article
MicroRNAs located in the Hox gene clusters are implicated in huntington's disease pathogenesis
Hoss, Andrew G, Kartha, Vinay K, Dong, Xianjun, Latourelle, Jeanne C, Dumitriu, Alexandra, Hadzi, Tiffany C, Macdonald, Marcy E, Gusella, James F, Akbarian, Schahram, Chen, Jiang-Fan, Weng, Zhiping, Myers, Richard H
Published in PLoS genetics (01.02.2014)
Published in PLoS genetics (01.02.2014)
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Journal Article
PDGFRβ Is a Novel Marker of Stromal Activation in Oral Squamous Cell Carcinomas
Kartha, Vinay K, Stawski, Lukasz, Han, Rong, Haines, Paul, Gallagher, George, Noonan, Vikki, Kukuruzinska, Maria, Monti, Stefano, Trojanowska, Maria
Published in PloS one (29.04.2016)
Published in PloS one (29.04.2016)
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Journal Article
Functional and genomic analyses reveal therapeutic potential of targeting β-catenin/CBP activity in head and neck cancer
Kartha, Vinay K, Alamoud, Khalid A, Sadykov, Khikmet, Nguyen, Bach-Cuc, Laroche, Fabrice, Feng, Hui, Lee, Jina, Pai, Sara I, Varelas, Xaralabos, Egloff, Ann Marie, Snyder-Cappione, Jennifer E, Belkina, Anna C, Bais, Manish V, Monti, Stefano, Kukuruzinska, Maria A
Published in Genome medicine (20.07.2018)
Published in Genome medicine (20.07.2018)
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Journal Article
Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma
LaFave, Lindsay M., Kartha, Vinay K., Ma, Sai, Meli, Kevin, Del Priore, Isabella, Lareau, Caleb, Naranjo, Santiago, Westcott, Peter M.K., Duarte, Fabiana M., Sankar, Venkat, Chiang, Zachary, Brack, Alison, Law, Travis, Hauck, Haley, Okimoto, Annalisa, Regev, Aviv, Buenrostro, Jason D., Jacks, Tyler
Published in Cancer cell (10.08.2020)
Published in Cancer cell (10.08.2020)
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Journal Article
A YAP/TAZ-Regulated Molecular Signature Is Associated with Oral Squamous Cell Carcinoma
Hiemer, Samantha E, Zhang, Liye, Kartha, Vinay K, Packer, Trevor S, Almershed, Munirah, Noonan, Vikki, Kukuruzinska, Maria, Bais, Manish V, Monti, Stefano, Varelas, Xaralabos
Published in Molecular cancer research (01.06.2015)
Published in Molecular cancer research (01.06.2015)
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Journal Article
Epigenetic memory of coronavirus infection in innate immune cells and their progenitors
Cheong, Jin-Gyu, Ravishankar, Arjun, Sharma, Siddhartha, Parkhurst, Christopher N., Grassmann, Simon A., Wingert, Claire K., Laurent, Paoline, Ma, Sai, Paddock, Lucinda, Miranda, Isabella C., Karakaslar, Emin Onur, Nehar-Belaid, Djamel, Thibodeau, Asa, Bale, Michael J., Kartha, Vinay K., Yee, Jim K., Mays, Minh Y., Jiang, Chenyang, Daman, Andrew W., Martinez de Paz, Alexia, Ahimovic, Dughan, Ramos, Victor, Lercher, Alexander, Nielsen, Erik, Alvarez-Mulett, Sergio, Zheng, Ling, Earl, Andrew, Yallowitz, Alisha, Robbins, Lexi, LaFond, Elyse, Weidman, Karissa L., Racine-Brzostek, Sabrina, Yang, He S., Price, David R., Leyre, Louise, Rendeiro, André F., Ravichandran, Hiranmayi, Kim, Junbum, Borczuk, Alain C., Rice, Charles M., Jones, R. Brad, Schenck, Edward J., Kaner, Robert J., Chadburn, Amy, Zhao, Zhen, Pascual, Virginia, Elemento, Olivier, Schwartz, Robert E., Buenrostro, Jason D., Niec, Rachel E., Barrat, Franck J., Lief, Lindsay, Sun, Joseph C., Ucar, Duygu, Josefowicz, Steven Z.
Published in Cell (31.08.2023)
Published in Cell (31.08.2023)
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Journal Article
Functional inference of gene regulation using single-cell multi-omics
Kartha, Vinay K., Duarte, Fabiana M., Hu, Yan, Ma, Sai, Chew, Jennifer G., Lareau, Caleb A., Earl, Andrew, Burkett, Zach D., Kohlway, Andrew S., Lebofsky, Ronald, Buenrostro, Jason D.
Published in Cell genomics (14.09.2022)
Published in Cell genomics (14.09.2022)
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Journal Article
Inhibition of LSD1 epigenetically attenuates oral cancer growth and metastasis
Alsaqer, Saqer F, Tashkandi, Mustafa M, Kartha, Vinay K, Yang, Ya-Ting, Alkheriji, Yazeed, Salama, Andrew, Varelas, Xaralabos, Kukuruzinska, Maria, Monti, Stefano, Bais, Manish V
Published in Oncotarget (26.09.2017)
Published in Oncotarget (26.09.2017)
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Journal Article
miR-10b-5p expression in Huntington's disease brain relates to age of onset and the extent of striatal involvement
Hoss, Andrew G, Labadorf, Adam, Latourelle, Jeanne C, Kartha, Vinay K, Hadzi, Tiffany C, Gusella, James F, MacDonald, Marcy E, Chen, Jiang-Fan, Akbarian, Schahram, Weng, Zhiping, Vonsattel, Jean Paul, Myers, Richard H
Published in BMC medical genomics (01.03.2015)
Published in BMC medical genomics (01.03.2015)
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Journal Article
Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung
Concepcion, Carla P, Ma, Sai, LaFave, Lindsay M, Bhutkar, Arjun, Liu, Manyuan, DeAngelo, Lydia P, Kim, Jonathan Y, Del Priore, Isabella, Schoenfeld, Adam J, Miller, Manon, Kartha, Vinay K, Westcott, Peter M K, Sánchez-Rivera, Francisco J, Meli, Kevin, Gupta, Manav, Bronson, Roderick T, Riely, Gregory J, Rekhtman, Natasha, Rudin, Charles M, Kim, Carla F, Regev, Aviv, Buenrostro, Jason D, Jacks, Tyler
Published in Cancer discovery (01.02.2022)
Published in Cancer discovery (01.02.2022)
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Journal Article
β-Catenin/CBP inhibition alters epidermal growth factor receptor fucosylation status in oral squamous cell carcinoma
Chandler, Kevin Brown, Alamoud, Khalid A, Stahl, Vanessa L, Nguyen, Bach-Cuc, Kartha, Vinay K, Bais, Manish V, Nomoto, Kenichi, Owa, Takashi, Monti, Stefano, Kukuruzinska, Maria A, Costello, Catherine E
Published in Molecular omics (01.06.2020)
Published in Molecular omics (01.06.2020)
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Journal Article
Abstract 2516: Inhibition of Β-catenin/CBP signaling in oral cancer alters EGFR N-glycosylation and abundance
Chandler, Kevin B., Alamoud, Khalid, Kartha, Vinay K., Sadykov, Khikmet, Monti, Stefano, Kukuruzinska, Maria A., Costello, Catherine E.
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article
Abstract 2506: Smarca4 inactivation promotes lineage-specific transformation and early metastatic features in the lung
Concepcion, Carla P., Ma, Sai, LaFave, Lindsay M., Bhutkar, Arjun, Liu, Manyuan, DeAngelo, Lydia P., Kim, Jonathan Y., Priore, Isabella Del, Schoenfeld, Adam J., Kartha, Vinay K., Westcott, Peter M., Sánchez-Rivera, Francisco J., Meli, Kevin, Gupta, Manav, Riely, Gregory J., Rekhtman, Natasha, Rudin, Charles M., Kim, Carla F., Regev, Aviv, Buenrostro, Jason D., Jacks, Tyler
Published in Cancer research (Chicago, Ill.) (01.07.2021)
Published in Cancer research (Chicago, Ill.) (01.07.2021)
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Journal Article
Dissecting the Regulation of Human Hematopoiesis at Single-Cell and Single-Variant Resolution
Bao, Erik L., Ulirsch, Jacob C., Lareau, Caleb A., Ludwig, Leif S., Guo, Michael H., Benner, Christian, Satpathy, Ansuman T., Kartha, Vinay K., Salem, Rany M., Hirschhorn, Joel N., Finucane, Hilary K., Aryee, Martin J., Buenrostro, Jason D., Sankaran, Vijay G.
Published in Blood (29.11.2018)
Published in Blood (29.11.2018)
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Journal Article
PDGFR[beta] Is a Novel Marker of Stromal Activation in Oral Squamous Cell Carcinomas
Kartha, Vinay K, Stawski, Lukasz, Han, Rong, Haines, Paul, Gallagher, George, Noonan, Vikki, Kukuruzinska, Maria, Monti, Stefano, Trojanowska, Maria
Published in PloS one (29.04.2016)
Published in PloS one (29.04.2016)
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Journal Article
Functional and genomic analyses reveal therapeutic potential of targeting [beta]-catenin/CBP activity in head and neck cancer
Kartha, Vinay K, Alamoud, Khalid A, Sadykov, Khikmet, Nguyen, Bach-Cuc, Laroche, Fabrice, Feng, Hui, Lee, Jina, Pai, Sara I, Varelas, Xaralabos, Egloff, Ann Marie, Snyder-Cappione, Jennifer E, Belkina, Anna C, Bais, Manish V, Monti, Stefano, Kukuruzinska, Maria A
Published in Genome medicine (20.07.2018)
Published in Genome medicine (20.07.2018)
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Journal Article