Cyanate as an energy source for nitrifiers
Palatinszky, Marton, Herbold, Craig, Jehmlich, Nico, Pogoda, Mario, Han, Ping, von Bergen, Martin, Lagkouvardos, Ilias, Karst, Søren M., Galushko, Alexander, Koch, Hanna, Berry, David, Daims, Holger, Wagner, Michael
Published in Nature (London) (06.08.2015)
Published in Nature (London) (06.08.2015)
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Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
Singleton, Caitlin M., Petriglieri, Francesca, Kristensen, Jannie M., Kirkegaard, Rasmus H., Michaelsen, Thomas Y., Andersen, Martin H., Kondrotaite, Zivile, Karst, Søren M., Dueholm, Morten S., Nielsen, Per H., Albertsen, Mads
Published in Nature communications (31.03.2021)
Published in Nature communications (31.03.2021)
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Journal Article
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
Karst, Søren M., Ziels, Ryan M., Kirkegaard, Rasmus H., Sørensen, Emil A., McDonald, Daniel, Zhu, Qiyun, Knight, Rob, Albertsen, Mads
Published in Nature methods (01.02.2021)
Published in Nature methods (01.02.2021)
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Journal Article
A Critical Assessment of the Microorganisms Proposed to be Important to Enhanced Biological Phosphorus Removal in Full-Scale Wastewater Treatment Systems
Stokholm-Bjerregaard, Mikkel, McIlroy, Simon J, Nierychlo, Marta, Karst, Søren M, Albertsen, Mads, Nielsen, Per H
Published in Frontiers in microbiology (27.04.2017)
Published in Frontiers in microbiology (27.04.2017)
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Journal Article
Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge
McIlroy, Simon J, Kirkegaard, Rasmus H, Dueholm, Morten S, Fernando, Eustace, Karst, Søren M, Albertsen, Mads, Nielsen, Per H
Published in Frontiers in microbiology (23.06.2017)
Published in Frontiers in microbiology (23.06.2017)
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Journal Article
The impact of immigration on microbial community composition in full-scale anaerobic digesters
Kirkegaard, Rasmus H., McIlroy, Simon J., Kristensen, Jannie M., Nierychlo, Marta, Karst, Søren M., Dueholm, Morten S., Albertsen, Mads, Nielsen, Per H.
Published in Scientific reports (24.08.2017)
Published in Scientific reports (24.08.2017)
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Journal Article
Survival and activity of individual bioaugmentation strains
Dueholm, Morten S., Marques, Irina G., Karst, Søren M., D’Imperio, Seth, Tale, Vaibhav P., Lewis, Derrick, Nielsen, Per Halkjær, Nielsen, Jeppe Lund
Published in Bioresource technology (01.06.2015)
Published in Bioresource technology (01.06.2015)
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Journal Article
Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira
Daebeler, Anne, Kitzinger, Katharina, Koch, Hanna, Herbold, Craig W., Steinfeder, Michaela, Schwarz, Jasmin, Zechmeister, Thomas, Karst, Søren M., Albertsen, Mads, Nielsen, Per H., Wagner, Michael, Daims, Holger
Published in The ISME Journal (01.12.2020)
Published in The ISME Journal (01.12.2020)
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Journal Article
Genomic and in Situ Analyses Reveal the Micropruina spp. as Abundant Fermentative Glycogen Accumulating Organisms in Enhanced Biological Phosphorus Removal Systems
McIlroy, Simon J, Onetto, Cristobal A, McIlroy, Bianca, Herbst, Florian-Alexander, Dueholm, Morten S, Kirkegaard, Rasmus H, Fernando, Eustace, Karst, Søren M, Nierychlo, Marta, Kristensen, Jannie M, Eales, Kathryn L, Grbin, Paul R, Wimmer, Reinhard, Nielsen, Per Halkjær
Published in Frontiers in microbiology (23.05.2018)
Published in Frontiers in microbiology (23.05.2018)
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Journal Article
The role of inoculum and reactor configuration for microbial community composition and dynamics in mainstream partial nitritation anammox reactors
Agrawal, Shelesh, Karst, Søren M., Gilbert, Eva M., Horn, Harald, Nielsen, Per H., Lackner, Susanne
Published in MicrobiologyOpen (Weinheim) (01.08.2017)
Published in MicrobiologyOpen (Weinheim) (01.08.2017)
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Journal Article
Rapid and Flexible RT-qPCR Surveillance Platforms To Detect SARS-CoV-2 Mutations
Spiess, Katja, Gunalan, Vithiagaran, Marving, Ellinor, Nielsen, Sofie Holdflod, Jørgensen, Michelle G P, Fomsgaard, Anna S, Nielsen, Line, Alfaro-Núñez, Alonzo, Karst, Søren M, Mortensen, Shila, Rasmussen, Morten, Lassaunière, Ria, Rosenstierne, Maiken Worsøe, Polacek, Charlotta, Fonager, Jannik, Cohen, Arieh S, Nielsen, Claus, Fomsgaard, Anders
Published in Microbiology spectrum (14.02.2023)
Published in Microbiology spectrum (14.02.2023)
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Journal Article
Greengenes2 unifies microbial data in a single reference tree
McDonald, Daniel, Jiang, Yueyu, Balaban, Metin, Cantrell, Kalen, Zhu, Qiyun, Gonzalez, Antonio, Morton, James T., Nicolaou, Giorgia, Parks, Donovan H., Karst, Søren M., Albertsen, Mads, Hugenholtz, Philip, DeSantis, Todd, Song, Se Jin, Bartko, Andrew, Havulinna, Aki S., Jousilahti, Pekka, Cheng, Susan, Inouye, Michael, Niiranen, Teemu, Jain, Mohit, Salomaa, Veikko, Lahti, Leo, Mirarab, Siavash, Knight, Rob
Published in Nature biotechnology (01.05.2024)
Published in Nature biotechnology (01.05.2024)
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Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
Alm, Erik, Broberg, Eeva K, Connor, Thomas, Hodcroft, Emma B, Komissarov, Andrey B, Maurer-Stroh, Sebastian, Melidou, Angeliki, Neher, Richard A, O'Toole, Áine, Pereyaslov, Dmitriy
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (13.08.2020)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (13.08.2020)
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Journal Article
Complete Genome Sequence of the Bacterium Aalborg_AAW-1, Representing a Novel Family within the Candidate Phylum SR1
Dueholm, Morten Simonsen, Albertsen, Mads, Stokholm-Bjerregaard, Mikkel, McIlroy, Simon J, Karst, Søren M, Nielsen, Per Halkjær
Published in Genome announcements (Washington, DC) (11.06.2015)
Published in Genome announcements (Washington, DC) (11.06.2015)
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Journal Article
"Candidatus Propionivibrio aalborgensis": A Novel Glycogen Accumulating Organism Abundant in Full-Scale Enhanced Biological Phosphorus Removal Plants
Albertsen, Mads, McIlroy, Simon J, Stokholm-Bjerregaard, Mikkel, Karst, Søren M, Nielsen, Per H
Published in Frontiers in microbiology (04.07.2016)
Published in Frontiers in microbiology (04.07.2016)
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Journal Article
Author Correction: Greengenes2 unifies microbial data in a single reference tree
McDonald, Daniel, Jiang, Yueyu, Balaban, Metin, Cantrell, Kalen, Zhu, Qiyun, Gonzalez, Antonio, Morton, James T., Nicolaou, Giorgia, Parks, Donovan H., Karst, Søren M., Albertsen, Mads, Hugenholtz, Philip, DeSantis, Todd, Song, Se Jin, Bartko, Andrew, Havulinna, Aki S., Jousilahti, Pekka, Cheng, Susan, Inouye, Michael, Niiranen, Teemu, Jain, Mohit, Salomaa, Veikko, Lahti, Leo, Mirarab, Siavash, Knight, Rob
Published in Nature biotechnology (01.05.2024)
Published in Nature biotechnology (01.05.2024)
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Journal Article
Complete Genome Sequence of Actinobaculum schaalii Strain CCUG 27420
Kristiansen, Rikke, Dueholm, Morten S, Bank, Steffen, Nielsen, Per Halkjær, Karst, Søren M, Cattoir, Vincent, Lienhard, Reto, Grisold, Andrea J, Olsen, Anne Buchhave, Reinhard, Mark, Søby, Karen Marie, Christensen, Jens Jørgen, Prag, Jørgen, Thomsen, Trine R
Published in Genome announcements (Washington, DC) (04.09.2014)
Published in Genome announcements (Washington, DC) (04.09.2014)
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