A Whole-Cell Computational Model Predicts Phenotype from Genotype
Karr, Jonathan R., Sanghvi, Jayodita C., Macklin, Derek N., Gutschow, Miriam V., Jacobs, Jared M., Bolival, Benjamin, Assad-Garcia, Nacyra, Glass, John I., Covert, Markus W.
Published in Cell (20.07.2012)
Published in Cell (20.07.2012)
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Journal Article
Ecological integrity is both real and valuable
Karr, James R., Larson, Eric R., Chu, Ellen W.
Published in Conservation science and practice (01.02.2022)
Published in Conservation science and practice (01.02.2022)
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Journal Article
Organizing genome engineering for the gigabase scale
Bartley, Bryan A, Beal, Jacob, Karr, Jonathan R, Strychalski, Elizabeth A
Published in Nature communications (04.02.2020)
Published in Nature communications (04.02.2020)
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Journal Article
BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks
Lang, Paul F, Chebaro, Yassmine, Zheng, Xiaoyue, P Sekar, John A, Shaikh, Bilal, Natale, Darren A, Karr, Jonathan R
Published in Genome Biology (18.05.2020)
Published in Genome Biology (18.05.2020)
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Journal Article
Quantitative Susceptibility Mapping after Sports-Related Concussion
Koch, K M, Meier, T B, Karr, R, Nencka, A S, Muftuler, L T, McCrea, M
Published in American journal of neuroradiology : AJNR (01.07.2018)
Published in American journal of neuroradiology : AJNR (01.07.2018)
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Journal Article
Editorial: Computer-Aided Biodesign Across Scales
Gorochowski, Thomas E, Karr, Jonathan R, Parmeggiani, Fabio, Yordanov, Boyan
Published in Frontiers in bioengineering and biotechnology (15.06.2021)
Published in Frontiers in bioengineering and biotechnology (15.06.2021)
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Journal Article
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models
Karr, Jonathan R, Williams, Alex H, Zucker, Jeremy D, Raue, Andreas, Steiert, Bernhard, Timmer, Jens, Kreutz, Clemens, Wilkinson, Simon, Allgood, Brandon A, Bot, Brian M, Hoff, Bruce R, Kellen, Michael R, Covert, Markus W, Stolovitzky, Gustavo A, Meyer, Pablo
Published in PLoS computational biology (01.05.2015)
Published in PLoS computational biology (01.05.2015)
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Journal Article
The natural flow regime: a paradigm for river conservation and restoration
Poff, N. LeRoy, Allan, J. David, Bain, Mark B, Karr, James R, Prestegaard, Karen L, Richter, Brian D, Sparks, Richard E, Stromberg, Julie C
Published in Bioscience (01.12.1997)
Published in Bioscience (01.12.1997)
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Journal Article
The principles of whole-cell modeling
Karr, Jonathan R, Takahashi, Koichi, Funahashi, Akira
Published in Current opinion in microbiology (01.10.2015)
Published in Current opinion in microbiology (01.10.2015)
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Journal Article
REVIVING URBAN STREAMS: LAND USE, HYDROLOGY, BIOLOGY, AND HUMAN BEHAVIOR
Booth, Derek B., Karr, James R., Schauman, Sally, Konrad, Christopher P., Morley, Sarah A., Larson, Marit G., Burges, Stephen J.
Published in Journal of the American Water Resources Association (01.10.2004)
Published in Journal of the American Water Resources Association (01.10.2004)
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Journal Article
Building on Two Decades of Ecosystem Management and Biodiversity Conservation under the Northwest Forest Plan, USA
DellaSala, Dominick, Baker, Rowan, Heiken, Doug, Frissell, Chris, Karr, James, Nelson, S., Noon, Barry, Olson, David, Strittholt, James
Published in Forests (01.09.2015)
Published in Forests (01.09.2015)
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Journal Article
Book Review
Datanator: an integrated database of molecular data for quantitatively modeling cellular behavior
Roth, Yosef D, Lian, Zhouyang, Pochiraju, Saahith, Shaikh, Bilal, Karr, Jonathan R
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Journal Article
Simulating single-cell metabolism using a stochastic flux-balance analysis algorithm
Tourigny, David S., Goldberg, Arthur P., Karr, Jonathan R.
Published in Biophysical journal (07.12.2021)
Published in Biophysical journal (07.12.2021)
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Journal Article
Long‐term monitoring reveals the long lifespans of Neotropical forest landbirds
Pollock, Henry S., Tarwater, Corey E., Karr, James R., Brawn, Jeffrey D.
Published in Ecology (Durham) (01.09.2024)
Published in Ecology (Durham) (01.09.2024)
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Journal Article
Long-term monitoring reveals widespread and severe declines of understory birds in a protected Neotropical forest
Pollock, Henry S, Toms, Judith D, Tarwater, Corey E, Benson, Thomas J, Karr, James R, Brawn, Jeffrey D
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2022)
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Journal Article