Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data
Basu, Sumanta, Duren, William, Evans, Charles R, Burant, Charles F, Michailidis, George, Karnovsky, Alla
Published in Bioinformatics (Oxford, England) (15.05.2017)
Published in Bioinformatics (Oxford, England) (15.05.2017)
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Journal Article
Metabolomics and diabetes: analytical and computational approaches
Sas, Kelli M, Karnovsky, Alla, Michailidis, George, Pennathur, Subramaniam
Published in Diabetes (New York, N.Y.) (01.03.2015)
Published in Diabetes (New York, N.Y.) (01.03.2015)
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Journal Article
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data
Karnovsky, Alla, Weymouth, Terry, Hull, Tim, Tarcea, V. Glenn, Scardoni, Giovanni, Laudanna, Carlo, Sartor, Maureen A., Stringer, Kathleen A., Jagadish, H. V., Burant, Charles, Athey, Brian, Omenn, Gilbert S.
Published in Bioinformatics (01.02.2012)
Published in Bioinformatics (01.02.2012)
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Journal Article
Rapid metabolic shifts occur during the transition between hunger and satiety in Drosophila melanogaster
Wilinski, Daniel, Winzeler, Jasmine, Duren, William, Persons, Jenna L., Holme, Kristina J., Mosquera, Johan, Khabiri, Morteza, Kinchen, Jason M., Freddolino, Peter L., Karnovsky, Alla, Dus, Monica
Published in Nature communications (06.09.2019)
Published in Nature communications (06.09.2019)
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Journal Article
Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress
Jin, Meiyan, Fuller, Gregory G., Han, Ting, Yao, Yao, Alessi, Amelia F., Freeberg, Mallory A., Roach, Nathan P., Moresco, James J., Karnovsky, Alla, Baba, Misuzu, Yates, John R., Gitler, Aaron D., Inoki, Ken, Klionsky, Daniel J., Kim, John K.
Published in Cell reports (Cambridge) (25.07.2017)
Published in Cell reports (Cambridge) (25.07.2017)
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Journal Article
Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks
Gao, Jing, Tarcea, V. Glenn, Karnovsky, Alla, Mirel, Barbara R., Weymouth, Terry E., Beecher, Christopher W., Cavalcoli, James D., Athey, Brian D., Omenn, Gilbert S., Burant, Charles F., Jagadish, H. V.
Published in Bioinformatics (01.04.2010)
Published in Bioinformatics (01.04.2010)
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Journal Article
Comparing the Fasting and Random-Fed Metabolome Response to an Oral Glucose Tolerance Test in Children and Adolescents: Implications of Sex, Obesity, and Insulin Resistance
LaBarre, Jennifer L, Hirschfeld, Emily, Soni, Tanu, Kachman, Maureen, Wigginton, Janis, Duren, William, Fleischman, Johanna Y, Karnovsky, Alla, Burant, Charles F, Lee, Joyce M
Published in Nutrients (25.09.2021)
Published in Nutrients (25.09.2021)
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Journal Article
ConceptGen: a gene set enrichment and gene set relation mapping tool
Sartor, Maureen A., Mahavisno, Vasudeva, Keshamouni, Venkateshwar G., Cavalcoli, James, Wright, Zachary, Karnovsky, Alla, Kuick, Rork, Jagadish, H.V., Mirel, Barbara, Weymouth, Terry, Athey, Brian, Omenn, Gilbert S.
Published in Bioinformatics (15.02.2010)
Published in Bioinformatics (15.02.2010)
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Journal Article
Signal intensities derived from different NMR probes and parameters contribute to variations in quantification of metabolites
Lacy, Paige, McKay, Ryan T, Finkel, Michael, Karnovsky, Alla, Woehler, Scott, Lewis, Michael J, Chang, David, Stringer, Kathleen A
Published in PloS one (21.01.2014)
Published in PloS one (21.01.2014)
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Journal Article
Metabolomic signatures associated with weight gain and psychosis spectrum diagnoses: A pilot study
Lee, Jiwon, Costa-Dookhan, Kenya, Panganiban, Kristoffer, MacKenzie, Nicole, Treen, Quinn Casuccio, Chintoh, Araba, Remington, Gary, Müller, Daniel J, Sockalingam, Sanjeev, Gerretsen, Philip, Sanches, Marcos, Karnovsky, Alla, Stringer, Kathleen A, Ellingrod, Vicki L, Tso, Ivy F, Taylor, Stephan F, Agarwal, Sri Mahavir, Hahn, Margaret K, Ward, Kristen M
Published in Frontiers in psychiatry (24.04.2023)
Published in Frontiers in psychiatry (24.04.2023)
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Journal Article
Genetic and Metabolite Variability in One-Carbon Metabolism Applied to an Insulin Resistance Model in Patients With Schizophrenia Receiving Atypical Antipsychotics
Ward, Kristen M, Burghardt, Kyle, Kraal, A Zarina, Jaeger, Andrew, Yeomans, Larisa, McHugh, Cora, Karnovsky, Alla, Stringer, Kathleen A, Ellingrod, Vicki L
Published in Frontiers in psychiatry (25.05.2021)
Published in Frontiers in psychiatry (25.05.2021)
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Journal Article
metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics
Habra, Hani, Meijer, Jennifer L, Shen, Tong, Fiehn, Oliver, Gaul, David A, Fernández, Facundo M, Rempfert, Kaitlin R, Metz, Thomas O, Peterson, Karen E, Evans, Charles R, Karnovsky, Alla
Published in Metabolites (15.02.2024)
Published in Metabolites (15.02.2024)
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Journal Article
class of selective antibacterials derived from a protein kinase inhibitor pharmacophore
Miller, J. Richard, Dunham, Steve, Mochalkin, Igor, Banotai, Craig, Bowman, Matthew, Buist, Susan, Dunkle, Bill, Hanna, Debra, Harwood, H. James, Huband, Michael D, Karnovsky, Alla, Kuhn, Michael, Limberakis, Chris, Liu, Jia Y, Mehrens, Shawn, Mueller, W. Thomas, Narasimhan, Lakshmi, Ogden, Adam, Ohren, Jeff, Prasad, J.V.N. Vara, Shelly, John A, Skerlos, Laura, Sulavik, Mark, Thomas, V. Hayden, VanderRoest, Steve, Wang, LiAnn, Wang, Zhigang, Whitton, Amy, Zhu, Tong, Stover, C. Kendall
Published in Proceedings of the National Academy of Sciences - PNAS (10.02.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (10.02.2009)
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Journal Article
Molecular characterization of the endoplasmic reticulum: Insights from proteomic studies
Chen, Xuequn, Karnovsky, Alla, Sans, Maria Dolors, Andrews, Philip C, Williams, John A
Published in Proteomics (Weinheim) (01.11.2010)
Published in Proteomics (Weinheim) (01.11.2010)
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Journal Article
Pharmacometabolomics identifies candidate predictor metabolites of an L‐carnitine treatment mortality benefit in septic shock
Puskarich, Michael A., Jennaro, Theodore S., Gillies, Christopher E., Evans, Charles R., Karnovsky, Alla, McHugh, Cora E., Flott, Thomas L., Jones, Alan E., Stringer, Kathleen A., Shapiro, Nathan I, Guirgis, Faheem W, Runyon, Michael, Adams, Jason Y, Sherwin, Robert, Arnold, Ryan, Roberts, Brian W, Kurz, Michael C, Wang, Henry E, Kline, Jeffrey A, Mark Courtney, D, Trzeciak, Stephen, Sterling, Sarah A, Nandi, Utsav, Patki, Deepti, Viele, Kert
Published in Clinical and translational science (01.11.2021)
Published in Clinical and translational science (01.11.2021)
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Journal Article
Lipidomic Signature of Progression of Chronic Kidney Disease in the Chronic Renal Insufficiency Cohort
Afshinnia, Farsad, Rajendiran, Thekkelnaycke M, Karnovsky, Alla, Soni, Tanu, Wang, Xue, Xie, Dawei, Yang, Wei, Shafi, Tariq, Weir, Matthew R, He, Jiang, Brecklin, Carolyn S, Rhee, Eugene P, Schelling, Jeffrey R, Ojo, Akinlolu, Feldman, Harold, Michailidis, George, Pennathur, Subramaniam
Published in Kidney international reports (01.11.2016)
Published in Kidney international reports (01.11.2016)
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Journal Article
Sustained Perturbation of Metabolism and Metabolic Subphenotypes Are Associated With Mortality and Protein Markers of the Host Response
Jennaro, Theodore S, Puskarich, Michael A, Evans, Charles R, Karnovsky, Alla, Flott, Thomas L, McLellan, Laura A, Jones, Alan E, Stringer, Kathleen A
Published in Critical care explorations (01.04.2023)
Published in Critical care explorations (01.04.2023)
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Journal Article
Proteomics analysis of rough endoplasmic reticulum in pancreatic beta cells
Lee, Jin-sook, Wu, Yanning, Schnepp, Patricia, Fang, Jingye, Zhang, Xuebao, Karnovsky, Alla, Woods, James, Stemmer, Paul M., Liu, Ming, Zhang, Kezhong, Chen, Xuequn
Published in Proteomics (Weinheim) (01.05.2015)
Published in Proteomics (Weinheim) (01.05.2015)
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Journal Article