Deep learning for the PSIPRED Protein Analysis Workbench
Buchan, Daniel W A, Moffat, Lewis, Lau, Andy, Kandathil, Shaun M, Jones, David T
Published in Nucleic acids research (05.07.2024)
Published in Nucleic acids research (05.07.2024)
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Journal Article
A guide to machine learning for biologists
Greener, Joe G., Kandathil, Shaun M., Moffat, Lewis, Jones, David T.
Published in Nature reviews. Molecular cell biology (01.01.2022)
Published in Nature reviews. Molecular cell biology (01.01.2022)
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Journal Article
Prediction of interresidue contacts with DeepMetaPSICOV in CASP13
Kandathil, Shaun M., Greener, Joe G., Jones, David T.
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
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Journal Article
Recent developments in deep learning applied to protein structure prediction
Kandathil, Shaun M., Greener, Joe G., Jones, David T.
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
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Journal Article
Machine learning methods for predicting protein structure from single sequences
Kandathil, Shaun M., Lau, Andy M., Jones, David T.
Published in Current opinion in structural biology (01.08.2023)
Published in Current opinion in structural biology (01.08.2023)
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Journal Article
Exploring structural diversity across the protein universe with The Encyclopedia of Domains
Lau, Andy M, Bordin, Nicola, Kandathil, Shaun M, Sillitoe, Ian, Waman, Vaishali P, Wells, Jude, Orengo, Christine A, Jones, David T
Published in Science (American Association for the Advancement of Science) (01.11.2024)
Published in Science (American Association for the Advancement of Science) (01.11.2024)
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Journal Article
Improved fragment-based protein structure prediction by redesign of search heuristics
Kandathil, Shaun M., Garza-Fabre, Mario, Handl, Julia, Lovell, Simon C.
Published in Scientific reports (12.09.2018)
Published in Scientific reports (12.09.2018)
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Journal Article
Accuracy and tractability of a kriging model of intramolecular polarizable multipolar electrostatics and its application to histidine
Kandathil, Shaun M., Fletcher, Timothy L., Yuan, Yongna, Knowles, Joshua, Popelier, Paul L. A.
Published in Journal of computational chemistry (05.08.2013)
Published in Journal of computational chemistry (05.08.2013)
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Journal Article
Uncommon mutational profiles of metastatic colorectal cancer detected during routine genotyping using next generation sequencing
Franczak, Claire, Kandathil, Shaun M., Gilson, Pauline, Husson, Marie, Rouyer, Marie, Demange, Jessica, Leroux, Agnès, Merlin, Jean-Louis, Harlé, Alexandre
Published in Scientific reports (08.05.2019)
Published in Scientific reports (08.05.2019)
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Journal Article
Accurate prediction of polarised high order electrostatic interactions for hydrogen bonded complexes using the machine learning method kriging
Hughes, Timothy J., Kandathil, Shaun M., Popelier, Paul L.A.
Published in Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy (05.02.2015)
Published in Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy (05.02.2015)
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Journal Article
Adaptive HIV-1 evolutionary trajectories are constrained by protein stability
Olabode, Abayomi S., Kandathil, Shaun M., Lovell, Simon C., Robertson, David L.
Published in Virus evolution (01.07.2017)
Published in Virus evolution (01.07.2017)
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Journal Article
Toward a detailed understanding of search trajectories in fragment assembly approaches to protein structure prediction: Low-Resolution Sampling in Fragment Assembly
Kandathil, Shaun M., Handl, Julia, Lovell, Simon C.
Published in Proteins, structure, function, and bioinformatics (01.04.2016)
Published in Proteins, structure, function, and bioinformatics (01.04.2016)
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Journal Article