Plasma protein biomarkers for primary graft dysfunction after lung transplantation: a single-center cohort analysis
Chacon-Alberty, Lourdes, Kanchi, Rupa S, Ye, Shengbin, Hochman-Mendez, Camila, Daoud, Daoud, Coarfa, Cristian, Li, Meng, Grimm, Sandra L, Baz, Maher, Rosas, Ivan, Loor, Gabriel
Published in Scientific reports (27.09.2022)
Published in Scientific reports (27.09.2022)
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Interchromosomal template-switching as a novel molecular mechanism for imprinting perturbations associated with Temple syndrome
Carvalho, Claudia M B, Coban-Akdemir, Zeynep, Hijazi, Hadia, Yuan, Bo, Pendleton, Matthew, Harrington, Eoghan, Beaulaurier, John, Juul, Sissel, Turner, Daniel J, Kanchi, Rupa S, Jhangiani, Shalini N, Muzny, Donna M, Gibbs, Richard A, Stankiewicz, Pawel, Belmont, John W, Shaw, Chad A, Cheung, Sau Wai, Hanchard, Neil A, Sutton, V Reid, Bader, Patricia I, Lupski, James R
Published in Genome medicine (23.04.2019)
Published in Genome medicine (23.04.2019)
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348-OR: Glycine and Branched-Chain Amino Acids (BCAA) Metabolic Signature in Youth with Obesity and Type 2 Diabetes (T2D)
AYASH, HEBA EL, MOHAMMAD, MAHMOUD A., SHAWAR, REEM S., KANCHI, RUPA S., SHARMA, SUSAN, PUYAU, MAURICE R., COARFA, CRISTIAN, BACHA, FIDA
Published in Diabetes (New York, N.Y.) (01.06.2022)
Published in Diabetes (New York, N.Y.) (01.06.2022)
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Oncogenic Signaling Pathways in The Cancer Genome Atlas
Chatila, Walid K., Luna, Augustin, Kantheti, Havish S., Daian, Foysal, Shmulevich, Ilya, Greene, Casey S., Iavarone, Antonio, Tward, Aaron D., Meyerson, Matthew, Sofia, Heidi J., Zenklusen, Jean C., Pihl, Todd, Meier, Sam, Noble, Michael S., Kramer, Roger, Hegde, Apurva M., Li, Jun, Rao, Arvind, Abeshouse, Adam, Schultz, Nikolaus, Taylor, Barry S., Stuart, Joshua M., Wong, Christopher K., Parker, Joel S., Carlsen, Rebecca, Tam, Angela, Gabriel, Stacey B., Ha, Gavin, Schumacher, Steven E., Maglinte, Dennis T., Balu, Saianand, Skelly, Tara, Laird, Peter W., Lewis, Lora, Muzny, Donna, Santibanez, Jireh, Wang, Min, Morris, Scott, Shelton, Candace, Gerken, Mark, Costello, Tony, Reis, Rui M., Scapulatempo-Neto, Cristovam, Singh, Rosy, Duffy, Elizabeth R., Setdikova, Galiya, Devine, Karen, Ostrom, Quinn T., Deyarmin, Brenda, Kvecher, Leonid, Mural, Richard J., Latour, Mathieu, Lacombe, Louis, Lipp, Eric, Marks, Jeffrey, Pickens, Alan, Shin, Dong M., Zhang, Hongzheng, Calatozzolo, Chiara, Cuzzubbo, Stefania, Kycler, Witold, Giné, Eva, Beuschlein, Felix, Borad, Mitesh, Chandan, Vishal, Farnell, Michael, Torbenson, Michael, Logothetis, Christopher, Rice, David, Jakrot, Valerie, Mann, Graham, Moncrieff, Marc, Doruc, Serghei, Bartlett, John, Parfitt, Jeremy, Bifulco, Carlo, Hayward, Nicholas, Grazi, Gianluca, Marino, Mirella, Naska, Theresa, Borgia, Jeffrey A., Pool, Mark, Gaudio, Eugenio, Bell, Sue, Hilty, Joe, Sexton, Katherine C., Asa, Sylvia L., Schlomm, Thorsten, Prados, Michael, Smith-McCune, Karen, Bossler, Aaron, Moxley, Katherine, Carlotti, Carlos Gilberto, Swisher, Elizabeth, Korst, Robert, Rathmell, W. Kimryn, Heath, Sharon, Aredes, Natália D., Mariamidze, Armaz, Van Allen, Eliezer M.
Published in Cell (05.04.2018)
Published in Cell (05.04.2018)
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Comprehensive Characterization of Cancer Driver Genes and Mutations
Colaprico, Antonio, Cao, Song, Liang, Wen-Wei, Hess, Julian M., Ferguson, Martin L., Hutter, Carolyn M., Tarnuzzer, Roy, Wang, Zhining, Noble, Michael S., Dhankani, Varsha, Knijnenburg, Theo, Miller, Michael, Abeshouse, Adam, Ladanyi, Marc, Luna, Augustin, Wong, Christopher K., Yau, Christina, Kasaian, Katayoon, Kucherlapati, Melanie H., Danilova, Ludmila, Bootwalla, Moiz S., Fan, Cheng, Mose, Lisle E., Roach, Jeffrey, Tan, Donghui, Covington, Kyle, Donehower, Lawrence A., Drummond, Jennifer, Liu, Xiuping, Morgan, Margaret, Wheeler, David A., Appelbaum, Elizabeth L., Bailey, Matthew, Kandoth, Cyriac, Wilson, Richard K., Penny, Robert, Thompson, Eric, Zmuda, Erik, de Carvalho, Ana C., Fregnani, José H., Huntsman, David, Kohl, Bernard, Paklina, Oxana, McPherson, Christopher, Barnholtz-Sloan, Jill S., Tucker, Kelinda, Larson, Caroline, Iacocca, Mary, Bergeron, Alain, Sepulveda, Antonia, Desjardins, Laurence, Sastre, Xavier, Cheng, Feixiong, Force, Seth, Khuri, Fadlo, Owonikoko, Taofeek, Korpershoek, Esther, Looijenga, Leendert, DiMeco, Francesco, Kycler, Witold, Chung, Ki, Noushmehr, Houtan, Scarpace, Lisa, Campo, Elias, Van Bang, Nguyen, Colman, Howard, Breggia, Anne, Bryce, Alan H., Copland, John A., Petersen, Gloria, Zhang, Lizhi, Mann, Graham, Mirsaidi, Cyrus, Zaren, Howard, Stancul, Irina, Tcaciuc, Diana, Arnaout, Angel, Rassl, Doris M., Urba, Walter, Farver, Carol, Raymond, Daniel, Dinkin, Mikhail, Carpino, Guido, Dubina, Michael, Abdel-Rahman, Mohamed H., Mandt, Randy, Nguyen, Phuong, Rai, Karan, Waldmann, Jens, Fassnacht, Martin, Simon, Ronald, Fehrenbach, Ashley, von Deimling, Andreas, Jacobus, Laura, Carlotti, Carlos Gilberto, Godwin, Eryn M., Carey, Thomas, Getz, Gad, Lazar, Alexander J., Ding, Li
Published in Cell (05.04.2018)
Published in Cell (05.04.2018)
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Pathogenic Germline Variants in 10,389 Adult Cancers
Ritter, Deborah I., Reynolds, Sheila, Houlahan, Kathleen E., Cho, Juok, Reynolds, Sheila, Akbani, Rehan, Phillips, Sarah M., Zhang, Hongxin, Balasundaram, Miruna, Chuah, Eric, Holt, Robert, Schein, Jacqueline E., Sipahimalani, Payal, Thiessen, Nina, Beroukhim, Rameen, Cope, Leslie, Weisenberger, Daniel J., Hoyle, Alan P., Jefferys, Stuart R., Mieczkowski, Piotr A., Perou, Amy H., Shi, Yan, Veluvolu, Umadevi, Fan, Huihui, Donehower, Lawrence A., Ding, Li, Mardis, Elaine R., Curley, Erin, Mallery, David, Paulauskis, Joseph, Lichtenberg, Tara M., Eschbacher, Jennifer, Ittmann, Michael, Andry, Chris, Tavobilov, Mikhail, Cramer, Daniel, Barrett, Wendi, Karlan, Beth Y., Zach, Leigh Anne, Hu, Hai, Swanson, Patricia, Chabot, John, Su, Tao, Voronina, Olga, Signoretti, Sabina, Berchuck, Andrew, Houck, John, Hartmann, Arndt, Hanh, Phan Thi, Juhl, Hartmut, Kopp, Karla, Roberts, Lewis, Yang, Ju Dong, Moran, Cesar, Ramondetta, Lois, Troncoso, Patricia, Tsao, Anne, Wistuba, Ignacio, Scolyer, Richard, Stretch, Jonathan, Wilmott, James, Reuter, Victor, Park, Joong-Won, Hung, Nguyen Phi, Kebebew, Electron, Pinto, Peter A., Moncrieff, Marc, Pass, Harvey, Botnariuc, Natalia, Pirtac, Maria, Tamakawa, Raina, Antenucci, Anna, Facciolo, Francesco, Chevalier, Simone, Brewer, Cathy, Pennell, Nathan A., Omberg, Larsson, Pilarski, Robert, Senecal, Kelly, Schadendorf, Dirk, Sauter, Guido, Olabode, Oluwole, Disaia, Philip, Roggin, Kevin, Mannelli, Massimo, Postier, Russel, Walker, Joan, Feldman, Michael, Dhir, Rajiv, Luketich, James, Prince, Mark, Rozek, Laura, Fong, Kwun M., Shriver, Craig D., Govindan, Ramaswamy, Heath, Sharon, Aredes, Natália D., Wendl, Michael C., Reimand, Jüri, Meric-Bernstam, Funda
Published in Cell (05.04.2018)
Published in Cell (05.04.2018)
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The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
Reznik, Ed, Reuter, Victor E., Signoretti, Sabina, Srinivasan, Ramaprasad, Wheeler, David A., Yang, Lixing, Kim, William Y., Robertson, A. Gordon, Zhang, Jiashan (Julia), Wu, Ye, Liu, Yuexin, Kanchi, Rupa S., Zhang, Jiexin, Gross, Benjamin E., Kundra, Ritika, Phillips, Sarah M., Zhang, Hongxin, Peto, Myron, Mungall, Andrew J., Lai, Phillip H., Van Den Berg, David J., Bodenheimer, Tom, Simons, Janae V., Veluvolu, Umadevi, Fan, Huihui, Bellair, Michelle, Dinh, Huyen, Doddapaneni, HarshaVardhan, Han, Yi, Lee, Sandra, Li, Wei, Mardis, Elaine R., Gastier-Foster, Julie M., Lichtenberg, Tara M., Le, Xuan, Thorp, Richard, Lyadov, Vladimir, De Rose, Agostino, Rabeno, Brenda, Têtu, Bernard, Chabot, John, Hibshoosh, Hanina, Potapova, Olga, Mariani, Odette, Bigner, Darell, Stoop, Hans, Cuppini, Lucia, Finocchiaro, Gaetano, Murawa, Dawid, Guillermo, Armando López, Van Bang, Nguyen, Akeredolu, Teniola, Birrer, Michael, Nagorney, David, Stanton, Melissa, Yang, Ju Dong, Bondaruk, Jolanta, Broaddus, Russell, Guo, Charles, Lazar, Alexander J., Meric-Bernstam, Funda, Tsao, Anne, Carter, Candace, Haydu, Lauren, Hersey, Peter, Synott, Maria, Drwiega, Paul, Hung, Nguyen Phi, Kebebew, Electron, Metwalli, Adam R., Schmidt, Laura S., Cernat, Mircea, Gorincioi, Ghenadie, Tamakawa, Raina, Chevalier, Simone, McKercher, Ginette, Smolenski, Kathy, Alvaro, Domenico, Bragazzi, Maria Consiglia, Cardinale, Vincenzo, Chesla, David, Cottingham, Sandra, Lehman, Norman L., Powers, James, Huland, Hartwig, Sauter, Guido, Carroll, Peter R., Forgie, Ian, Carney, Michael, Knutson, Tina, Godwin, Andrew K., Boussioutas, Alex, Saad, Fred, Bocklage, Therese, Feldman, Michael, Valdivieso, Federico, Dhir, Rajiv, Sankarankuty, Ajith, Fantacone-Campbell, J. Leigh, Rubin, Mark A.
Published in Cell reports (Cambridge) (03.04.2018)
Published in Cell reports (Cambridge) (03.04.2018)
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Journal Article
Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer
Robertson, A. Gordon, Kim, Jaegil, Al-Ahmadie, Hikmat, Bellmunt, Joaquim, Guo, Guangwu, Cherniack, Andrew D., Hinoue, Toshinori, Laird, Peter W., Hoadley, Katherine A., Akbani, Rehan, Castro, Mauro A.A., Gibb, Ewan A., Kanchi, Rupa S., Gordenin, Dmitry A., Shukla, Sachet A., Sanchez-Vega, Francisco, Hansel, Donna E., Czerniak, Bogdan A., Reuter, Victor E., Su, Xiaoping, de Sa Carvalho, Benilton, Chagas, Vinicius S., Mungall, Karen L., Sadeghi, Sara, Pedamallu, Chandra Sekhar, Lu, Yiling, Klimczak, Leszek J., Zhang, Jiexin, Choo, Caleb, Ojesina, Akinyemi I., Bullman, Susan, Leraas, Kristen M., Lichtenberg, Tara M., Wu, Catherine J., Schultz, Nicholaus, Getz, Gad, Meyerson, Matthew, Mills, Gordon B., McConkey, David J., Weinstein, John N., Kwiatkowski, David J., Lerner, Seth P.
Published in Cell (09.08.2018)
Published in Cell (09.08.2018)
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Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas
Campbell, Joshua D., Liu, Yuexin, Byers, Lauren Averett, Zuna, Rosemary, Al-Ahmadie, Hikmat, Flores, Elsa R., Tsai, Kenneth Y., Felau, Ina, Zhang, Jiashan (Julia), Meier, Sam, Bernard, Brady, Zhang, Jiexin, Gross, Benjamin E., Nissan, Moriah G., Phillips, Sarah M., Zhang, Hongxin, Bowlby, Reanne, Mungall, Karen, Schein, Jacqueline E., Sipahimalani, Payal, Tse, Kane, Cope, Leslie, Lai, Phillip H., Van Den Berg, David J., Jefferys, Stuart R., Mieczkowski, Piotr A., Soloway, Matthew G., Veluvolu, Umadevi, Fan, Huihui, Zhou, Wanding, Bellair, Michelle, Doddapaneni, HarshaVardhan, Muzny, Donna, Xi, Liu, Mardis, Elaine R., Morris, Scott, Paulauskis, Joseph, Gastier-Foster, Julie M., Lichtenberg, Tara M., Carvalho, Andre L., Silveira, Henrique C.S., Burnette, Andrew, Noss, Ardene, Ittmann, Michael, Andry, Chris, Lyadov, Vladimir, Raut, Chandrajit P., Têtu, Bernard, Chabot, John, Potapova, Olga, Bigner, Darell, Secord, Angeles, Ramalingam, Suresh, Mattei, Luca, Houck, John, Guillermo, Armando López, Kang, Koo Jeong, Thompson, R. Houston, Yang, Ju Dong, Bondaruk, Jolanta, Broaddus, Russell, Fujimoto, Junya, Thompson, Timothy, Tsao, Anne, Wistuba, Ignacio, Haydu, Lauren, Hersey, Peter, Lee, Kenneth, Spillane, Andrew, Drwiega, Paul, Park, Joong-Won, Hung, Nguyen Phi, Kebebew, Electron, Pacak, Karel, Schmidt, Laura S., Gorincioi, Ghenadie, Thomas, George, Tamakawa, Raina, Smolenski, Kathy, Alvaro, Domenico, Bragazzi, Maria Consiglia, Chesla, David, Becker, Karl-Friedrich, Schoenfield, Lynn, Senecal, Kelly, Tischler, Arthur, Nelson, Mark, Carroll, Peter R., Carey, Francis, Forgie, Ian, Carney, Michael, Godwin, Andrew K., Bocklage, Therese, Valdivieso, Federico, Dhir, Rajiv, Sankarankuty, Ajith, Fantacone-Campbell, J. Leigh, Kovatich, Albert J., Weinstein, John N., Peto, Myron
Published in Cell reports (Cambridge) (03.04.2018)
Published in Cell reports (Cambridge) (03.04.2018)
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Abstract 3303: A comprehensive TCGA Pan-Cancer molecular study of gynecologic and breast cancers
Berger, Ashton, Korkut, Anil, Kanchi, Rupa S., Network, TCGA Pan-Gynecologic Group and Research, Mills, Gordon B., Levine, Douglas A., Akbani, Rehan
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
Ricketts, Christopher J., De Cubas, Aguirre A., Fan, Huihui, Smith, Christof C., Lang, Martin, Reznik, Ed, Bowlby, Reanne, Gibb, Ewan A., Akbani, Rehan, Beroukhim, Rameen, Bottaro, Donald P., Choueiri, Toni K., Gibbs, Richard A., Godwin, Andrew K., Haake, Scott, Hakimi, A. Ari, Henske, Elizabeth P., Hsieh, James J., Ho, Thai H., Kanchi, Rupa S., Krishnan, Bhavani, Kwiatkowski, David J., Liu, Wenbin, Merino, Maria J., Mills, Gordon B., Myers, Jerome, Nickerson, Michael L., Reuter, Victor E., Schmidt, Laura S., Shelley, C. Simon, Shen, Hui, Shuch, Brian, Signoretti, Sabina, Srinivasan, Ramaprasad, Tamboli, Pheroze, Thomas, George, Vincent, Benjamin G., Vocke, Cathy D., Wheeler, David A., Yang, Lixing, Kim, William Y., Robertson, A. Gordon, Spellman, Paul T., Rathmell, W. Kimryn, Linehan, W. Marston
Published in Cell reports (Cambridge) (23.04.2024)
Published in Cell reports (Cambridge) (23.04.2024)
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Abstract 6047: Identification of a 13 gene signature to predict survival in localized osteosarcoma
Patel, Tajhal D., Dholakia, Kshiti, Gandhi, Tanmay R., Kanchi, Rupa S., Grimm, Sandra L., Fu, Chenlian, Yustein, Jason T., Coarfa, Cristian
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Published in Cancer research (Chicago, Ill.) (15.06.2022)
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Comprehensive molecular characterization and analysis of muscle-invasive urothelial carcinomas
Lerner, Seth P., Robertson, Gordon, Kim, Jaegil, Cherniack, Andrew, Guo, Guangwu, Akbani, Rehan, Kanchi, Rupa S, Hoadley, Katherine A., Hinoue, Toshinori, Laird, Peter W., Al-Ahmadie, Hikmat, Bellmunt, Joaquim, Castro, Mauro, Gordenin, Dmitry, Mills, Gordon B., Sanchez-Vega, Francisco, Shukla, Sachet A, Gibb, Ewan A, Weinstein, John N., Kwiatkowski, David J.
Published in Journal of clinical oncology (20.05.2017)
Published in Journal of clinical oncology (20.05.2017)
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Let-7 restrains an oncogenic epigenetic circuit in AT2 cells to prevent ectopic formation of fibrogenic transitional cell intermediates and pulmonary fibrosis
Seasock, Matthew J, Shafiquzzaman, Md, Ruiz-Echartea, Maria E, Kanchi, Rupa S, Tran, Brandon T, Simon, Lukas M, Meyer, Matthew D, Erice, Phillip A, Lotlikar, Shivani L, Wenlock, Stephanie C, Ochsner, Scott A, Enright, Anton, Carisey, Alex F, Romero, Freddy, Rosas, Ivan O, King, Katherine Y, McKenna, Neil J, Coarfa, Cristian, Rodriguez, Antony
Published in bioRxiv : the preprint server for biology (27.05.2024)
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Published in bioRxiv : the preprint server for biology (27.05.2024)
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