Mutation of SIVA, a candidate metastasis gene identified from clonally related bilateral breast cancers, promotes breast cancer cell spread in vitro and in vivo
Vermehren-Schmaedick, Anke, Peto, Myron, Wagoner, Wendy, Chiotti, Kami E, Ramsey, Elizabeth, Wang, Xiaoyan, Rakshe, Shauna, Minnier, Jessica, Sears, Rosalie, Spellman, Paul, Luoh, Shiuh-Wen
Published in PloS one (09.05.2024)
Published in PloS one (09.05.2024)
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BET bromodomain inhibition blocks the function of a critical AR-independent master regulator network in lethal prostate cancer
Coleman, Daniel J., Gao, Lina, King, Carly J., Schwartzman, Jacob, Urrutia, Joshua, Sehrawat, Archana, Tayou, Junior, Balter, Ariel, Burchard, Julja, Chiotti, Kami E., Derrick, Daniel S., Sun, Duanchen, Xia, Zheng, Heiser, Laura M., Alumkal, Joshi J.
Published in Oncogene (01.07.2019)
Published in Oncogene (01.07.2019)
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Maintenance of MYC expression promotes de novo resistance to BET bromodomain inhibition in castration-resistant prostate cancer
Coleman, Daniel J., Gao, Lina, Schwartzman, Jacob, Korkola, James E., Sampson, David, Derrick, Daniel S., Urrutia, Joshua, Balter, Ariel, Burchard, Julja, King, Carly J., Chiotti, Kami E., Heiser, Laura M., Alumkal, Joshi J.
Published in Scientific reports (07.03.2019)
Published in Scientific reports (07.03.2019)
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Transcription Restores DNA Repair to Heterochromatin, Determining Regional Mutation Rates in Cancer Genomes
Zheng, Christina L., Wang, Nicholas J., Chung, Jongsuk, Moslehi, Homayoun, Sanborn, J. Zachary, Hur, Joseph S., Collisson, Eric A., Vemula, Swapna S., Naujokas, Agne, Chiotti, Kami E., Cheng, Jeffrey B., Fassihi, Hiva, Blumberg, Andrew J., Bailey, Celeste V., Fudem, Gary M., Mihm, Frederick G., Cunningham, Bari B., Neuhaus, Isaac M., Liao, Wilson, Oh, Dennis H., Cleaver, James E., LeBoit, Philip E., Costello, Joseph F., Lehmann, Alan R., Gray, Joe W., Spellman, Paul T., Arron, Sarah T., Huh, Nam, Purdom, Elizabeth, Cho, Raymond J.
Published in Cell reports (Cambridge) (20.11.2014)
Published in Cell reports (Cambridge) (20.11.2014)
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Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve
Piotrowski, Jeff S, Nagarajan, Saisubramanian, Kroll, Evgueny, Stanbery, Alison, Chiotti, Kami E, Kruckeberg, Arthur L, Dunn, Barbara, Sherlock, Gavin, Rosenzweig, Frank
Published in BMC evolutionary biology (02.04.2012)
Published in BMC evolutionary biology (02.04.2012)
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Identification of shared TCR sequences from T cells in human breast cancer using emulsion RT-PCR
Munson, Daniel J., Egelston, Colt A., Chiotti, Kami E., Parra, Zuly E., Bruno, Tullia C., Moore, Brandon L., Nakano, Taizo A., Simons, Diana L., Jimenez, Grecia, Yim, John H., Rozanov, Dmitri V., Falta, Michael T., Fontenot, Andrew P., Reynolds, Paul R., Leach, Sonia M., Borges, Virginia F., Kappler, John W., Spellman, Paul T., Lee, Peter P., Slansky, Jill E.
Published in Proceedings of the National Academy of Sciences - PNAS (19.07.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (19.07.2016)
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MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection
Rozanov, Dmitri V., Rozanov, Nikita D., Chiotti, Kami E., Reddy, Ashok, Wilmarth, Phillip A., David, Larry L., Cha, Seung W., Woo, Sunghee, Pevzner, Pavel, Bafna, Vineet, Burrows, Gregory G., Rantala, Juha K., Levin, Trevor, Anur, Pavana, Johnson-Camacho, Katie, Tabatabaei, Shaadi, Munson, Daniel J., Bruno, Tullia C., Slansky, Jill E., Kappler, John W., Hirano, Naoto, Boegel, Sebastian, Fox, Bernard A., Egelston, Colt, Simons, Diana L., Jimenez, Grecia, Lee, Peter P., Gray, Joe W., Spellman, Paul T.
Published in Journal of proteomics (30.03.2018)
Published in Journal of proteomics (30.03.2018)
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The Valley-of-Death: Reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment
Chiotti, Kami E., Kvitek, Daniel J., Schmidt, Karen H., Koniges, Gregory, Schwartz, Katja, Donckels, Elizabeth A., Rosenzweig, Frank, Sherlock, Gavin
Published in Genomics (San Diego, Calif.) (01.12.2014)
Published in Genomics (San Diego, Calif.) (01.12.2014)
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A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
Creason, Allison, Haan, David, Dang, Kristen, Chiotti, Kami E., Inkman, Matthew, Lamb, Andrew, Yu, Thomas, Hu, Yin, Norman, Thea C., Buchanan, Alex, van Baren, Marijke J., Spangler, Ryan, Rollins, M. Rick, Spellman, Paul T., Rozanov, Dmitri, Zhang, Jin, Maher, Christopher A., Caloian, Cristian, Watson, John D., Uhrig, Sebastian, Haas, Brian J., Jain, Miten, Akeson, Mark, Ahsen, Mehmet Eren, Zhang, Hongjiu, Wang, Yifan, Guan, Yuanfang, Nguyen, Cu, Sugai, Christopher, Jha, Alokkumar, Li, Jing Woei, Dobin, Alexander, Stolovitzky, Gustavo, Guinney, Justin, Boutros, Paul C., Stuart, Joshua M., Ellrott, Kyle
Published in Cell systems (18.08.2021)
Published in Cell systems (18.08.2021)
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Journal Article
Mutation of SIVA, a candidate metastasis gene identified from clonally related bilateral breast cancers, promotes breast cancer cell spread in vitro and in vivo
Anke Vermehren-Schmaedick, Myron Peto, Wendy Wagoner, Kami E. Chiotti, Elizabeth Ramsey, Xiaoyan Wang, Shauna Rakshe, Jessica Minnier, Rosalie Sears, Paul Spellman, Shiuh-Wen Luoh
Published in PloS one (01.01.2024)
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Published in PloS one (01.01.2024)
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Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway
Carrot-Zhang, Jian, Yao, Xiaotong, Devarakonda, Siddhartha, Deshpande, Aditya, Damrauer, Jeffrey S, Silva, Tiago Chedraoui, Wong, Christopher K, Choi, Hyo Young, Felau, Ina, Robertson, A Gordon, Castro, Mauro A A, Bao, Lisui, Rheinbay, Esther, Liu, Eric Minwei, Trieu, Tuan, Haan, David, Yau, Christina, Hinoue, Toshinori, Liu, Yuexin, Shapira, Ofer, Kumar, Kiran, Mungall, Karen L, Zhang, Hailei, Lee, Jake June-Koo, Berger, Ashton, Gao, Galen F, Zhitomirsky, Binyamin, Liang, Wen-Wei, Zhou, Meng, Moorthi, Sitapriya, Berger, Alice H, Collisson, Eric A, Zody, Michael C, Ding, Li, Cherniack, Andrew D, Getz, Gad, Elemento, Olivier, Benz, Christopher C, Stuart, Josh, Zenklusen, J C, Beroukhim, Rameen, Chang, Jason C, Campbell, Joshua D, Hayes, D Neil, Yang, Lixing, Laird, Peter W, Weinstein, John N, Kwiatkowski, David J, Tsao, Ming S, Travis, William D, Khurana, Ekta, Berman, Benjamin P, Hoadley, Katherine A, Robine, Nicolas, Meyerson, Matthew, Govindan, Ramaswamy, Imielinski, Marcin
Published in Cell reports (Cambridge) (02.02.2021)
Published in Cell reports (Cambridge) (02.02.2021)
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