Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy
Kendig, Katherine I, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Heldenbrand, Jacob R, Hernaez, Mikel, Hudson, Matthew E, Kalmbach, Michael T, Klee, Eric W, Mattson, Nathan R, Ross, Christian A, Taschuk, Morgan, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Published in Frontiers in genetics (20.08.2019)
Published in Frontiers in genetics (20.08.2019)
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Journal Article
Recommendations for performance optimizations when using GATK3.8 and GATK4
Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Published in BMC bioinformatics (08.11.2019)
Published in BMC bioinformatics (08.11.2019)
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Journal Article
CircularLogo: A lightweight web application to visualize intra-motif dependencies
Ye, Zhenqing, Ma, Tao, Kalmbach, Michael T, Dasari, Surendra, Kocher, Jean-Pierre A, Wang, Liguo
Published in BMC bioinformatics (22.05.2017)
Published in BMC bioinformatics (22.05.2017)
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Journal Article
Identification of factors associated with duplicate rate in ChIP-seq data
Tian, Shulan, Peng, Shuxia, Kalmbach, Michael, Gaonkar, Krutika S, Bhagwate, Aditya, Ding, Wei, Eckel-Passow, Jeanette, Yan, Huihuang, Slager, Susan L
Published in PloS one (03.04.2019)
Published in PloS one (03.04.2019)
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Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4
Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Published in BMC bioinformatics (17.12.2019)
Published in BMC bioinformatics (17.12.2019)
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Epigenetic alteration contributes to the transcriptional reprogramming in T-cell prolymphocytic leukemia
Tian, Shulan, Zhang, Henan, Zhang, Pan, Kalmbach, Michael, Lee, Jeong-Heon, Ordog, Tamas, Hampel, Paul J, Call, Timothy G, Witzig, Thomas E, Kay, Neil E, Klee, Eric W, Slager, Susan L, Yan, Huihuang, Ding, Wei
Published in Scientific reports (15.04.2021)
Published in Scientific reports (15.04.2021)
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Journal Article
Impact of post-alignment processing in variant discovery from whole exome data
Tian, Shulan, Yan, Huihuang, Kalmbach, Michael, Slager, Susan L
Published in BMC bioinformatics (03.10.2016)
Published in BMC bioinformatics (03.10.2016)
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Journal Article
Comparative analysis of de novo assemblers for variation discovery in personal genomes
Tian, Shulan, Yan, Huihuang, Klee, Eric W, Kalmbach, Michael, Slager, Susan L
Published in Briefings in bioinformatics (28.09.2018)
Published in Briefings in bioinformatics (28.09.2018)
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