Radiomic analysis in prediction of Human Papilloma Virus status
Yu, Kaixian, Zhang, Youyi, Yu, Yang, Huang, Chao, Liu, Rongjie, Li, Tengfei, Yang, Liuqing, Morris, Jeffrey S., Baladandayuthapani, Veerabhadran, Zhu, Hongtu
Published in Clinical and translational radiation oncology (01.12.2017)
Published in Clinical and translational radiation oncology (01.12.2017)
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Journal Article
Personalized chemotherapy selection for breast cancer using gene expression profiles
Yu, Kaixian, Sang, Qing-Xiang Amy, Lung, Pei-Yau, Tan, Winston, Lively, Ty, Sheffield, Cedric, Bou-Dargham, Mayassa J., Liu, Jun S., Zhang, Jinfeng
Published in Scientific reports (03.03.2017)
Published in Scientific reports (03.03.2017)
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Journal Article
Proteomic characterization of paired non-malignant and malignant African-American prostate epithelial cell lines distinguishes them by structural proteins
Myers, Jennifer S, Vallega, Karin A, White, Jason, Yu, Kaixian, Yates, Clayton C, Sang, Qing-Xiang Amy
Published in BMC cancer (11.07.2017)
Published in BMC cancer (11.07.2017)
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Journal Article
Assessment of network module identification across complex diseases
Choobdar, Sarvenaz, Ahsen, Mehmet E., Crawford, Jake, Tomasoni, Mattia, Fang, Tao, Lamparter, David, Lin, Junyuan, Hescott, Benjamin, Hu, Xiaozhe, Mercer, Johnathan, Natoli, Ted, Narayan, Rajiv, Subramanian, Aravind, Zhang, Jitao D., Stolovitzky, Gustavo, Kutalik, Zoltán, Lage, Kasper, Slonim, Donna K., Saez-Rodriguez, Julio, Cowen, Lenore J., Bergmann, Sven, Marbach, Daniel
Published in Nature methods (01.09.2019)
Published in Nature methods (01.09.2019)
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Journal Article
Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression
Cao, Shaolong, Wang, Jennifer R., Ji, Shuangxi, Yang, Peng, Dai, Yaoyi, Guo, Shuai, Montierth, Matthew D., Shen, John Paul, Zhao, Xiao, Chen, Jingxiao, Lee, Jaewon James, Guerrero, Paola A., Spetsieris, Nicholas, Engedal, Nikolai, Taavitsainen, Sinja, Yu, Kaixian, Livingstone, Julie, Bhandari, Vinayak, Hubert, Shawna M., Daw, Najat C., Futreal, P. Andrew, Efstathiou, Eleni, Lim, Bora, Viale, Andrea, Zhang, Jianjun, Nykter, Matti, Czerniak, Bogdan A., Brown, Powel H., Swanton, Charles, Msaouel, Pavlos, Maitra, Anirban, Kopetz, Scott, Campbell, Peter, Speed, Terence P., Boutros, Paul C., Zhu, Hongtu, Urbanucci, Alfonso, Demeulemeester, Jonas, Van Loo, Peter, Wang, Wenyi
Published in Nature biotechnology (01.11.2022)
Published in Nature biotechnology (01.11.2022)
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Journal Article
Abstract 829: Global tumor transcriptional activity reveals aggressiveness across multiple cancers
Cao, Shaolong, Wang, Jennifer R., Demeulemeester, Jonas, Chen, Jingxiao, Yu, Kaixian, Yang, Peng, Lim, Bora, Urbanucci, Alfonso, Campbell, Peter, Zhu, Hongtu, Van loo, Peter, Wang, Wenyi
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Abstract A04: Differential DNA methylation and network analysis in African American breast cancer
Yu, Kaixian, Steppi, Albert, Xu, Yun, Tang, Ke, Zhang, Jinfeng
Published in Cancer epidemiology, biomarkers & prevention (01.03.2016)
Published in Cancer epidemiology, biomarkers & prevention (01.03.2016)
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Journal Article
Neutral tumor evolution?
Tarabichi, Maxime, Martincorena, Iñigo, Gerstung, Moritz, Leroi, Armand M., Markowetz, Florian, Spellman, Paul T., Morris, Quaid D., Lingjærde, Ole Christian, Wedge, David C., Van Loo, Peter
Published in Nature genetics (01.12.2018)
Published in Nature genetics (01.12.2018)
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Journal Article
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
Dentro, Stefan C, Leshchiner, Ignaty, Haase, Kerstin, Tarabichi, Maxime, Wintersinger, Jeff, Deshwar, Amit G, Yu, Kaixian, Rubanova, Yulia, Macintyre, Geoff, Demeulemeester, Jonas, Vazquez-Garcia, Ignacio, Kleinheinz, Kortine, Livitz, Dimitri G, Salem Malikic, Donmez, Nilgun, Sengupta, Subhajit, Anur, Pavana, Jolly, Clemency, Cmero, Marek, Rosebrock, Daniel, Schumacher, Steven, Fan, Yu, Fittall, Matthew, Drews, Ruben M, Yao, Xiaotong, Lee, Juhee, Schlesner, Matthias, Zhu, Hongtu, Adams, David J, Getz, Gad, Boutros, Paul C, Imielinski, Marcin, Beroukhim, Rameen, Sahinalp, S Cenk, Ji, Yuan, Peifer, Martin, Martincorena, Inigo, Markowetz, Florian, Mustonen, Ville, Yuan, Ke, Gerstung, Moritz, Spellman, Paul T, Wang, Wenyi, Morris, Quaid D, Wedge, David C, Peter Van Loo, Pcawg Evolution And Heterogeneity Working Group, Consortium, Pcawg
Published in bioRxiv (22.04.2020)
Published in bioRxiv (22.04.2020)
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Paper
Abstract 5275: An integrated pipeline for TCGA data analysis
Yu, Kaixian, Xu, Yun, Tang, Ke, Steppi, Albert, Zhou, Jun, Ouyang, Zheng, Zhang, Jinfeng
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Journal Article
Development of a one-day driving cycle for electric ride-hailing vehicles
Qin, Xiaoran, Yu, Kaixian, Li, Hanqian, Dai, Feng, Liu, Haijiang, Yang, Hai, Ye, Jieping, Zhu, Hongtu
Published in Transportation research. Part D, Transport and environment (01.12.2020)
Published in Transportation research. Part D, Transport and environment (01.12.2020)
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Journal Article
Author Correction: The evolutionary history of 2,658 cancers
Gerstung, Moritz, Jolly, Clemency, Leshchiner, Ignaty, Dentro, Stefan C., Gonzalez, Santiago, Rosebrock, Daniel, Mitchell, Thomas J., Rubanova, Yulia, Anur, Pavana, Yu, Kaixian, Tarabichi, Maxime, Deshwar, Amit, Wintersinger, Jeff, Kleinheinz, Kortine, Vázquez-García, Ignacio, Haase, Kerstin, Jerman, Lara, Sengupta, Subhajit, Macintyre, Geoff, Malikic, Salem, Donmez, Nilgun, Livitz, Dimitri G., Cmero, Marek, Demeulemeester, Jonas, Schumacher, Steven, Fan, Yu, Yao, Xiaotong, Lee, Juhee, Schlesner, Matthias, Boutros, Paul C., Bowtell, David D., Zhu, Hongtu, Getz, Gad, Imielinski, Marcin, Beroukhim, Rameen, Sahinalp, S. Cenk, Ji, Yuan, Peifer, Martin, Markowetz, Florian, Mustonen, Ville, Yuan, Ke, Wang, Wenyi, Morris, Quaid D., Spellman, Paul T., Wedge, David C., Van Loo, Peter
Published in Nature (London) (16.02.2023)
Published in Nature (London) (16.02.2023)
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Journal Article
Abstract 2034: Personalized chemotherapy regimen selection for breast cancer
Zhang, Jinfeng, Yu, Kaixian, Sang, Qingxiang Amy, Tan, Winston, Dargham, Mayassa B., Liu, Jun S., Lively, Ty, Sheffield, Cedric
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Journal Article
Abstract 4272: Pan-cancer analysis of intra-tumor heterogeneity in 9,116 cancers using a novel regularized likelihood model
Jiang, Yujie, Yu, Kaixian, Montierth, Matthew D., Ji, Shuangxi, Shin, Seung Jun, Guo, Shuai, Cao, Shaolong, Tang, Yuxin, Kopetz, Scott, Msaouel, Pavlos, Wang, Jennifer R., Kimmel, Marek, Van Loo, Peter, Zhu, Hongtu, Wang, Wenyi
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article