Ub-ProT reveals global length and composition of protein ubiquitylation in cells
Tsuchiya, Hikaru, Burana, Daocharad, Ohtake, Fumiaki, Arai, Naoko, Kaiho, Ai, Komada, Masayuki, Tanaka, Keiji, Saeki, Yasushi
Published in Nature communications (06.02.2018)
Published in Nature communications (06.02.2018)
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Structural basis for specific cleavage of Lys6-linked polyubiquitin chains by USP30
Sato, Yusuke, Okatsu, Kei, Saeki, Yasushi, Yamano, Koji, Matsuda, Noriyuki, Kaiho, Ai, Yamagata, Atsushi, Goto-Ito, Sakurako, Ishikawa, Minoru, Hashimoto, Yuichi, Tanaka, Keiji, Fukai, Shuya
Published in Nature structural & molecular biology (01.11.2017)
Published in Nature structural & molecular biology (01.11.2017)
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Unamplified cap analysis of gene expression on a single-molecule sequencer
Kanamori-Katayama, Mutsumi, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Katayama, Shintaro, Kojima, Miki, Bertin, Nicolas, Kaiho, Ai, Ninomiya, Noriko, Daub, Carsten O, Carninci, Piero, Forrest, Alistair R R, Hayashizaki, Yoshihide
Published in Genome research (01.07.2011)
Published in Genome research (01.07.2011)
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Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
Kawaji, Hideya, Lizio, Marina, Itoh, Masayoshi, Kanamori-Katayama, Mutsumi, Kaiho, Ai, Nishiyori-Sueki, Hiromi, Shin, Jay W, Kojima-Ishiyama, Miki, Kawano, Mitsuoki, Murata, Mitsuyoshi, Ninomiya-Fukuda, Noriko, Ishikawa-Kato, Sachi, Nagao-Sato, Sayaka, Noma, Shohei, Hayashizaki, Yoshihide, Forrest, Alistair R R, Carninci, Piero
Published in Genome research (01.04.2014)
Published in Genome research (01.04.2014)
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LRRN4 and UPK3B are markers of primary mesothelial cells
Kanamori-Katayama, Mutsumi, Kaiho, Ai, Ishizu, Yuri, Okamura-Oho, Yuko, Hino, Okio, Abe, Masaaki, Kishimoto, Takumi, Sekihara, Hisahiko, Nakamura, Yukio, Suzuki, Harukazu, Forrest, Alistair R R, Hayashizaki, Yoshihide
Published in PloS one (03.10.2011)
Published in PloS one (03.10.2011)
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Intrinsic signaling pathways modulate targeted protein degradation
Mori, Yuki, Akizuki, Yoshino, Honda, Rikuto, Takao, Miyu, Tsuchimoto, Ayaka, Hashimoto, Sota, Iio, Hiroaki, Kato, Masakazu, Kaiho-Soma, Ai, Saeki, Yasushi, Hamazaki, Jun, Murata, Shigeo, Ushijima, Toshikazu, Hattori, Naoko, Ohtake, Fumiaki
Published in Nature communications (02.07.2024)
Published in Nature communications (02.07.2024)
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Archival bone marrow smears are useful in targeted next-generation sequencing for diagnosing myeloid neoplasms
Sadato, Daichi, Hirama, Chizuko, Kaiho-Soma, Ai, Yamaguchi, Ayaka, Kogure, Hiroko, Takakuwa, Sonomi, Ogawa, Mina, Doki, Noriko, Ohashi, Kazuteru, Harada, Hironori, Oboki, Keisuke, Harada, Yuka
Published in PloS one (23.07.2021)
Published in PloS one (23.07.2021)
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Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer
Itoh, Masayoshi, Kojima, Miki, Nagao-Sato, Sayaka, Saijo, Eri, Lassmann, Timo, Kanamori-Katayama, Mutsumi, Kaiho, Ai, Lizio, Marina, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair R R, Hayashizaki, Yoshihide
Published in PloS one (30.01.2012)
Published in PloS one (30.01.2012)
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In Vivo Ubiquitin Linkage-type Analysis Reveals that the Cdc48-Rad23/Dsk2 Axis Contributes to K48-Linked Chain Specificity of the Proteasome
Tsuchiya, Hikaru, Ohtake, Fumiaki, Arai, Naoko, Kaiho, Ai, Yasuda, Sayaka, Tanaka, Keiji, Saeki, Yasushi
Published in Molecular cell (18.05.2017)
Published in Molecular cell (18.05.2017)
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Stress- and ubiquitylation-dependent phase separation of the proteasome
Yasuda, Sayaka, Tsuchiya, Hikaru, Kaiho, Ai, Guo, Qiang, Ikeuchi, Ken, Endo, Akinori, Arai, Naoko, Ohtake, Fumiaki, Murata, Shigeo, Inada, Toshifumi, Baumeister, Wolfgang, Fernández-Busnadiego, Rubén, Tanaka, Keiji, Saeki, Yasushi
Published in Nature (London) (13.02.2020)
Published in Nature (London) (13.02.2020)
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Sensitive detection of EGFR mutations using a competitive probe to suppress background in the SMart Amplification Process
Kawai, Yuki, Kikuchi, Takeshi, Mitani, Yasumasa, Kogo, Yasushi, Itoh, Masayoshi, Usui, Kengo, Kanamori, Hajime, Kaiho, Ai, Takakura, Hideki, Hoshi, Kanako, Cizdziel, Paul E., Hayashizaki, Yoshihide
Published in Biologicals (01.07.2008)
Published in Biologicals (01.07.2008)
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RNA polymerase II condensate formation and association with Cajal and histone locus bodies in living human cells
Imada, Takashi, Shimi, Takeshi, Kaiho, Ai, Saeki, Yasushi, Kimura, Hiroshi
Published in Genes to cells : devoted to molecular & cellular mechanisms (01.05.2021)
Published in Genes to cells : devoted to molecular & cellular mechanisms (01.05.2021)
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Quantitative live-cell imaging reveals spatio-temporal dynamics and cytoplasmic assembly of the 26S proteasome
Pack, Chan-Gi, Yukii, Haruka, Toh-e, Akio, Kudo, Tai, Tsuchiya, Hikaru, Kaiho, Ai, Sakata, Eri, Murata, Shigeo, Yokosawa, Hideyoshi, Sako, Yasushi, Baumeister, Wolfgang, Tanaka, Keiji, Saeki, Yasushi
Published in Nature communications (06.03.2014)
Published in Nature communications (06.03.2014)
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Pba3–Pba4 heterodimer acts as a molecular matchmaker in proteasome α-ring formation
Takagi, Kenji, Saeki, Yasushi, Yashiroda, Hideki, Yagi, Hirokazu, Kaiho, Ai, Murata, Shigeo, Yamane, Takashi, Tanaka, Keiji, Mizushima, Tsunehiro, Kato, Koichi
Published in Biochemical and biophysical research communications (25.07.2014)
Published in Biochemical and biophysical research communications (25.07.2014)
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TRIP12 promotes small-molecule-induced degradation through K29/K48-branched ubiquitin chains
Kaiho-Soma, Ai, Akizuki, Yoshino, Igarashi, Katsuhide, Endo, Akinori, Shoda, Takuji, Kawase, Yasuko, Demizu, Yosuke, Naito, Mikihiko, Saeki, Yasushi, Tanaka, Keiji, Ohtake, Fumiaki
Published in Molecular cell (01.04.2021)
Published in Molecular cell (01.04.2021)
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Design, Synthesis, and Evaluation of Trivalent PROTACs Having a Functionalization Site with Controlled Orientation
Huang, Yifan, Yokoe, Hiromasa, Kaiho-Soma, Ai, Takahashi, Kazunori, Hirasawa, Yusuke, Morita, Hiroshi, Ohtake, Fumiaki, Kanoh, Naoki
Published in Bioconjugate chemistry (19.01.2022)
Published in Bioconjugate chemistry (19.01.2022)
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cIAP1-based degraders induce degradation via branched ubiquitin architectures
Akizuki, Yoshino, Morita, Mai, Mori, Yuki, Kaiho-Soma, Ai, Dixit, Shivani, Endo, Akinori, Shimogawa, Marie, Hayashi, Gosuke, Naito, Mikihiko, Okamoto, Akimitsu, Tanaka, Keiji, Saeki, Yasushi, Ohtake, Fumiaki
Published in Nature chemical biology (01.03.2023)
Published in Nature chemical biology (01.03.2023)
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Correction to “Design, Synthesis, and Evaluation of Trivalent PROTACs Having a Functionalization Site with Controlled Orientation”
Huang, Yifan, Yokoe, Hiromasa, Kaiho-Soma, Ai, Takahashi, Kazunori, Hirasawa, Yusuke, Morita, Hiroshi, Ohtake, Fumiaki, Kanoh, Naoki
Published in Bioconjugate chemistry (20.09.2023)
Published in Bioconjugate chemistry (20.09.2023)
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M-Ras evolved independently of R-Ras and its neural function is conserved between mammalian and ascidian, which lacks classical Ras
Keduka, Etsuko, Kaiho, Ai, Hamada, Mayuko, Watanabe-Takano, Haruko, Takano, Kazunori, Ogasawara, Michio, Satou, Yutaka, Satoh, Nori, Endo, Takeshi
Published in Gene (15.01.2009)
Published in Gene (15.01.2009)
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