Lesion Shedding Model: unraveling site-specific contributions to ctDNA
Rhrissorrakrai, Kahn, Utro, Filippo, Levovitz, Chaya, Parida, Laxmi
Published in Briefings in bioinformatics (19.03.2023)
Published in Briefings in bioinformatics (19.03.2023)
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Journal Article
Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers
Parikh, Aparna R., Leshchiner, Ignaty, Elagina, Liudmila, Goyal, Lipika, Levovitz, Chaya, Siravegna, Giulia, Livitz, Dimitri, Rhrissorrakrai, Kahn, Martin, Elizabeth E., Van Seventer, Emily E., Hanna, Megan, Slowik, Kara, Utro, Filippo, Pinto, Christopher J., Wong, Alicia, Danysh, Brian P., de la Cruz, Ferran Fece, Fetter, Isobel J., Nadres, Brandon, Shahzade, Heather A., Allen, Jill N., Blaszkowsky, Lawrence S., Clark, Jeffrey W., Giantonio, Bruce, Murphy, Janet E., Nipp, Ryan D., Roeland, Eric, Ryan, David P., Weekes, Colin D., Kwak, Eunice L., Faris, Jason E., Wo, Jennifer Y., Aguet, François, Dey-Guha, Ipsita, Hazar-Rethinam, Mehlika, Dias-Santagata, Dora, Ting, David T., Zhu, Andrew X., Hong, Theodore S., Golub, Todd R., Iafrate, A. John, Adalsteinsson, Viktor A., Bardelli, Alberto, Parida, Laxmi, Juric, Dejan, Getz, Gad, Corcoran, Ryan B.
Published in Nature medicine (01.09.2019)
Published in Nature medicine (01.09.2019)
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Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11.21 to metastasis
Farshidfar, Farshad, Rhrissorrakrai, Kahn, Levovitz, Chaya, Peng, Cong, Knight, James, Bacchiocchi, Antonella, Su, Juan, Yin, Mingzhu, Sznol, Mario, Ariyan, Stephan, Clune, James, Olino, Kelly, Parida, Laxmi, Nikolaus, Joerg, Zhang, Meiling, Zhao, Shuang, Wang, Yan, Huang, Gang, Wan, Miaojian, Li, Xianan, Cao, Jian, Yan, Qin, Chen, Xiang, Newman, Aaron M., Halaban, Ruth
Published in Nature communications (23.02.2022)
Published in Nature communications (23.02.2022)
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Parallel Genomic Alterations of Antigen and Payload Targets Mediate Polyclonal Acquired Clinical Resistance to Sacituzumab Govitecan in Triple-Negative Breast Cancer
Coates, James T, Sun, Sheng, Leshchiner, Ignaty, Thimmiah, Nayana, Martin, Elizabeth E, McLoughlin, Daniel, Danysh, Brian P, Slowik, Kara, Jacobs, Raquel A, Rhrissorrakrai, Kahn, Utro, Filippo, Levovitz, Chaya, Denault, Elyssa, Walmsley, Charlotte S, Kambadakone, Avinash, Stone, James R, Isakoff, Steven J, Parida, Laxmi, Juric, Dejan, Getz, Gad, Bardia, Aditya, Ellisen, Leif W
Published in Cancer discovery (01.10.2021)
Published in Cancer discovery (01.10.2021)
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Author Correction: Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11.21 to metastasis
Farshidfar, Farshad, Rhrissorrakrai, Kahn, Levovitz, Chaya, Peng, Cong, Knight, James, Bacchiocchi, Antonella, Su, Juan, Yin, Mingzhu, Sznol, Mario, Ariyan, Stephan, Clune, James, Olino, Kelly, Parida, Laxmi, Nikolaus, Joerg, Zhang, Meiling, Zhao, Shuang, Wang, Yan, Huang, Gang, Wan, Miaojian, Li, Xianan, Cao, Jian, Yan, Qin, Chen, Xiang, Newman, Aaron M., Halaban, Ruth
Published in Nature communications (10.05.2022)
Published in Nature communications (10.05.2022)
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Enhancing Next‐Generation Sequencing‐Guided Cancer Care Through Cognitive Computing
Patel, Nirali M., Michelini, Vanessa V., Snell, Jeff M., Balu, Saianand, Hoyle, Alan P., Parker, Joel S., Hayward, Michele C., Eberhard, David A., Salazar, Ashley H., McNeillie, Patrick, Xu, Jia, Huettner, Claudia S., Koyama, Takahiko, Utro, Filippo, Rhrissorrakrai, Kahn, Norel, Raquel, Bilal, Erhan, Royyuru, Ajay, Parida, Laxmi, Earp, H. Shelton, Grilley‐Olson, Juneko E., Hayes, D. Neil, Harvey, Stephen J., Sharpless, Norman E., Kim, William Y.
Published in The oncologist (Dayton, Ohio) (01.02.2018)
Published in The oncologist (Dayton, Ohio) (01.02.2018)
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Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge
Rhrissorrakrai, Kahn, Belcastro, Vincenzo, Bilal, Erhan, Norel, Raquel, Poussin, Carine, Mathis, Carole, Dulize, Rémi H J, Ivanov, Nikolai V, Alexopoulos, Leonidas, Rice, J Jeremy, Peitsch, Manuel C, Stolovitzky, Gustavo, Meyer, Pablo, Hoeng, Julia
Published in Bioinformatics (Oxford, England) (15.02.2015)
Published in Bioinformatics (Oxford, England) (15.02.2015)
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Journal Article
Dark-matter matters: Discriminating subtle blood cancers using the darkest DNA
Parida, Laxmi, Haferlach, Claudia, Rhrissorrakrai, Kahn, Utro, Filippo, Levovitz, Chaya, Kern, Wolfgang, Nadarajah, Niroshan, Twardziok, Sven, Hutter, Stephan, Meggendorfer, Manja, Walter, Wencke, Baer, Constance, Haferlach, Torsten
Published in PLoS computational biology (01.08.2019)
Published in PLoS computational biology (01.08.2019)
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Pirtobrutinib targets BTK C481S in ibrutinib-resistant CLL but second-site BTK mutations lead to resistance
Naeem, Aishath, Utro, Filippo, Wang, Qing, Cha, Justin, Vihinen, Mauno, Martindale, Stephen, Zhou, Yinglu, Ren, Yue, Tyekucheva, Svitlana, Kim, Annette S., Fernandes, Stacey M., Saksena, Gordon, Rhrissorrakrai, Kahn, Levovitz, Chaya, Danysh, Brian P., Slowik, Kara, Jacobs, Raquel A., Davids, Matthew S., Lederer, James A., Zain, Rula, Smith, C. I. Edvard, Leshchiner, Ignaty, Parida, Laxmi, Getz, Gad, Brown, Jennifer R.
Published in Blood advances (09.05.2023)
Published in Blood advances (09.05.2023)
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Journal Article
Mating induces an immune response and developmental switch in the Drosophila oviduct
Kapelnikov, Anat, Zelinger, Einat, Gottlieb, Yuval, Rhrissorrakrai, Kahn, Gunsalus, Kristin C, Heifetz, Yael
Published in Proceedings of the National Academy of Sciences - PNAS (16.09.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (16.09.2008)
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Author Correction: Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers
Parikh, Aparna R., Leshchiner, Ignaty, Elagina, Liudmila, Goyal, Lipika, Levovitz, Chaya, Siravegna, Giulia, Livitz, Dimitri, Rhrissorrakrai, Kahn, Martin, Elizabeth E., Van Seventer, Emily E., Hanna, Megan, Slowik, Kara, Utro, Filippo, Pinto, Christopher J., Wong, Alicia, Danysh, Brian P., de la Cruz, Ferran Fece, Fetter, Isobel J., Nadres, Brandon, Shahzade, Heather A., Allen, Jill N., Blaszkowsky, Lawrence S., Clark, Jeffrey W., Giantonio, Bruce, Murphy, Janet E., Nipp, Ryan D., Roeland, Eric, Ryan, David P., Weekes, Colin D., Kwak, Eunice L., Faris, Jason E., Wo, Jennifer Y., Aguet, François, Dey-Guha, Ipsita, Hazar-Rethinam, Mehlika, Dias-Santagata, Dora, Ting, David T., Zhu, Andrew X., Hong, Theodore S., Golub, Todd R., Iafrate, A. John, Adalsteinsson, Viktor A., Bardelli, Alberto, Parida, Laxmi, Juric, Dejan, Getz, Gad, Corcoran, Ryan B.
Published in Nature medicine (01.12.2019)
Published in Nature medicine (01.12.2019)
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Journal Article
On Crowd-verification of Biological Networks
Ansari, Sam, Binder, Jean, Boue, Stephanie, Di Fabio, Anselmo, Hayes, William, Hoeng, Julia, Iskandar, Anita, Kleiman, Robin, Norel, Raquel, O'neel, Bruce, Peitsch, Manuel C., Poussin, Carine, Pratt, Dexter, Rhrissorrakrai, Kahn, Schlage, Walter K., Stolovitzky, Gustavo, Talikka, Marja
Published in Bioinformatics and Biology Insights (01.01.2013)
Published in Bioinformatics and Biology Insights (01.01.2013)
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Distinct cellular dynamics associated with response to CAR-T therapy for refractory B cell lymphoma
Haradhvala, Nicholas J., Leick, Mark B., Maurer, Katie, Gohil, Satyen H., Larson, Rebecca C., Yao, Ning, Gallagher, Kathleen M. E., Katsis, Katelin, Frigault, Matthew J., Southard, Jackson, Li, Shuqiang, Kann, Michael C., Silva, Harrison, Jan, Max, Rhrissorrakrai, Kahn, Utro, Filippo, Levovitz, Chaya, Jacobs, Raquel A., Slowik, Kara, Danysh, Brian P., Livak, Kenneth J., Parida, Laxmi, Ferry, Judith, Jacobson, Caron, Wu, Catherine J., Getz, Gad, Maus, Marcela V.
Published in Nature medicine (01.09.2022)
Published in Nature medicine (01.09.2022)
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Abstract 3574: A survey of mutations in biomedical literature using a machine based approach
Koyama, Takahiko, Rhrissorrakrai, Kahn, Parida, Laxmi
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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