Development of a high-resolution NGS-based HLA-typing and analysis pipeline
Wittig, Michael, Anmarkrud, Jarl A, Kässens, Jan C, Koch, Simon, Forster, Michael, Ellinghaus, Eva, Hov, Johannes R, Sauer, Sascha, Schimmler, Manfred, Ziemann, Malte, Görg, Siegfried, Jacob, Frank, Karlsen, Tom H, Franke, Andre
Published in Nucleic acids research (23.06.2015)
Published in Nucleic acids research (23.06.2015)
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Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome
Rühlemann, Malte Christoph, Hermes, Britt Marie, Bang, Corinna, Doms, Shauni, Moitinho-Silva, Lucas, Thingholm, Louise Bruun, Frost, Fabian, Degenhardt, Frauke, Wittig, Michael, Kässens, Jan, Weiss, Frank Ulrich, Peters, Annette, Neuhaus, Klaus, Völker, Uwe, Völzke, Henry, Homuth, Georg, Weiss, Stefan, Grallert, Harald, Laudes, Matthias, Lieb, Wolfgang, Haller, Dirk, Lerch, Markus M, Baines, John F, Franke, Andre
Published in Nature genetics (01.02.2021)
Published in Nature genetics (01.02.2021)
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UBTF::ATXN7L3 gene fusion defines novel B cell precursor ALL subtype with CDX2 expression and need for intensified treatment
Bastian, Lorenz, Hartmann, Alina M, Beder, Thomas, Hänzelmann, Sonja, Kässens, Jan, Bultmann, Miriam, Hoeppner, Marc P, Franzenburg, Sören, Wittig, Michael, Franke, Andre, Nagel, Inga, Spielmann, Malte, Reimer, Niklas, Busch, Hauke, Schwartz, Stefan, Steffen, Björn, Viardot, Andreas, Döhner, Konstanze, Kondakci, Mustafa, Wulf, Gerald, Wendelin, Knut, Renzelmann, Andrea, Kiani, Alexander, Trautmann, Heiko, Neumann, Martin, Gökbuget, Nicola, Brüggemann, Monika, Baldus, Claudia D
Published in Leukemia (01.06.2022)
Published in Leukemia (01.06.2022)
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Journal Article
Protein-coding variants contribute to the risk of atopic dermatitis and skin-specific gene expression
Mucha, Sören, Baurecht, Hansjörg, Novak, Natalija, Rodríguez, Elke, Bej, Saptarshi, Mayr, Gabriele, Emmert, Hila, Stölzl, Dora, Gerdes, Sascha, Jung, Eun Suk, Degenhardt, Frauke, Hübenthal, Matthias, Ellinghaus, Eva, Kässens, Jan Christian, Wienbrandt, Lars, Lieb, Wolfgang, Müller-Nurasyid, Martina, Hotze, Melanie, Dand, Nick, Grosche, Sarah, Marenholz, Ingo, Arnold, Andreas, Homuth, Georg, Schmidt, Carsten O., Wehkamp, Ulrike, Nöthen, Markus M., Hoffmann, Per, Paternoster, Lavinia, Standl, Marie, Bønnelykke, Klaus, Ahluwalia, Tarunveer S., Bisgaard, Hans, Peters, Annette, Gieger, Christian, Waldenberger, Melanie, Schulz, Holger, Strauch, Konstantin, Werfel, Thomas, Lee, Young-Ae, Wolfien, Markus, Rosenstiel, Philip, Wolkenhauer, Olaf, Schreiber, Stefan, Franke, Andre, Weidinger, Stephan, Ellinghaus, David
Published in Journal of allergy and clinical immunology (01.04.2020)
Published in Journal of allergy and clinical immunology (01.04.2020)
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Journal Article
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems
Gonzalez-Dominguez, Jorge, Wienbrandt, Lars, Kassens, Jan Christian, Ellinghaus, David, Schimmler, Manfred, Schmidt, Bertil
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2015)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2015)
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Journal Article
The Gene Expression Classifier ALLCatchR Identifies B‐cell Precursor ALL Subtypes and Underlying Developmental Trajectories Across Age
Beder, Thomas, Hansen, Björn‐Thore, Hartmann, Alina M., Zimmermann, Johannes, Amelunxen, Eric, Wolgast, Nadine, Walter, Wencke, Zaliova, Marketa, Antić, Željko, Chouvarine, Philippe, Bartsch, Lorenz, Barz, Malwine J., Bultmann, Miriam, Horns, Johanna, Bendig, Sonja, Kässens, Jan, Kaleta, Christoph, Cario, Gunnar, Schrappe, Martin, Neumann, Martin, Gökbuget, Nicola, Bergmann, Anke Katharina, Trka, Jan, Haferlach, Claudia, Brüggemann, Monika, Baldus, Claudia D., Bastian, Lorenz
Published in HemaSphere (01.09.2023)
Published in HemaSphere (01.09.2023)
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Journal Article
Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry
Immel, Alexander, Pierini, Federica, Rinne, Christoph, Meadows, John, Barquera, Rodrigo, Szolek, András, Susat, Julian, Böhme, Lisa, Dose, Janina, Bonczarowska, Joanna, Drummer, Clara, Fuchs, Katharina, Ellinghaus, David, Kässens, Jan Christian, Furholt, Martin, Kohlbacher, Oliver, Schade-Lindig, Sabine, Franke, Andre, Schreiber, Stefan, Krause, Johannes, Müller, Johannes, Lenz, Tobias L, Nebel, Almut, Krause-Kyora, Ben
Published in Communications biology (25.01.2021)
Published in Communications biology (25.01.2021)
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Journal Article
Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS
Kassens, Jan Christian, Wienbrandt, Lars, Schimmler, Manfred, Gonzalez-Dominguez, Jorge, Schmidt, Bertil
Published in 2016 IEEE 27th International Conference on Application-specific Systems, Architectures and Processors (ASAP) (01.07.2016)
Published in 2016 IEEE 27th International Conference on Application-specific Systems, Architectures and Processors (ASAP) (01.07.2016)
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Conference Proceeding
The gene expression classifier ALLCatchR identifies B-precursor ALL subtypes and underlying developmental trajectories across age
Beder, Thomas, Hansen, Bjoern-Thore, Hartmann, Alina M, Zimmermann, Johannes, Amelunxen, Eric, Wolgast, Nadine, Walter, Wencke, Zaliova, Marketa, Antic, Zeljko, Chouvarine, Philippe, Bartsch, Lorenz, Barz, Malwine, Bultmann, Miriam, Horns, Johanna, Bendig, Sonja, Kaessens, Jan, Kaleta, Christoph, Cario, Gunnar, Schrappe, Martin, Neumann, Martin, Goekbuget, Nicola, Bergmann, Anke Katharina, Trka, Jan, Haferlach, Claudia, Brueggemann, Monika, Baldus, Claudia D, Lorenz Bastian
Published in bioRxiv (03.02.2023)
Published in bioRxiv (03.02.2023)
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Paper
Neolithic genomes reveal a distinct ancient HLA allele pool and population transformation in Europe
Immel, Alexander, Rinne, Christoph, Meadows, John, Barquera, Rodrigo, Szolek, Andras, Pierini, Federica, Susat, Julian, Boehme, Lisa, Dose, Janina, Bonczarowska, Joanna, Drummer, Clara, Fuchs, Katharina, Ellinghaus, David, Kaessens, Jan Christian, Furholt, Martin, Kohlbacher, Oliver, Schade-Lindig, Sabine, Mathieson, Iain, Franke, Andre, Krause, Johannes, Mueller, Johannes, Lenz, Tobias L, Nebel, Almut, Krause-Kyora, Ben
Published in bioRxiv (21.11.2019)
Published in bioRxiv (21.11.2019)
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Paper