MicroRNAs and potential target interactions in psoriasis
Zibert, John R, Løvendorf, Marianne B, Litman, Thomas, Olsen, Jørgen, Kaczkowski, Bogumil, Skov, Lone
Published in Journal of dermatological science (01.06.2010)
Published in Journal of dermatological science (01.06.2010)
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Journal Article
Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers
Kaczkowski, Bogumil, Tanaka, Yuji, Kawaji, Hideya, Sandelin, Albin, Andersson, Robin, Itoh, Masayoshi, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R R
Published in Cancer research (Chicago, Ill.) (15.01.2016)
Published in Cancer research (Chicago, Ill.) (15.01.2016)
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Journal Article
Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages
Roy, Sugata, Schmeier, Sebastian, Kaczkowski, Bogumil, Arner, Erik, Alam, Tanvir, Ozturk, Mumin, Tamgue, Ousman, Parihar, Suraj P., Kawaji, Hideya, Itoh, Masayoshi, Lassmann, Timo, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Guler, Reto, Bajic, Vladimir B., Brombacher, Frank, Suzuki, Harukazu
Published in Scientific reports (30.04.2018)
Published in Scientific reports (30.04.2018)
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Journal Article
The Rectal Cancer microRNAome ― microRNA Expression in Rectal Cancer and Matched Normal Mucosa
GAEDCKE, Jochen, GRADE, Marian, BEISSBARTH, Tim, RIED, Thomas, LITMAN, Thomas, CAMPS, Jordi, SØKILDE, Rolf, KACZKOWSKI, Bogumil, SCHETTER, Aaron J, DIFILIPPANTONIO, Michael J, HARRIS, Curtis C, MICHAEL GHADIMI, B, MØLLER, Soren
Published in Clinical cancer research (15.09.2012)
Published in Clinical cancer research (15.09.2012)
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Journal Article
Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties
Das, Nando D, Chang, Jen-Chien, Hon, Chung-Chau, Kelly, S. Thomas, Ito, Shinsuke, Lizio, Marina, Kaczkowski, Bogumil, Watanabe, Hisami, Katsushima, Keisuke, Natsume, Atsushi, Koseki, Haruhiko, Kondo, Yutaka, Minoda, Aki, Umehara, Takashi
Published in BMC genomics (27.09.2023)
Published in BMC genomics (27.09.2023)
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Journal Article
Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC
Horie, Masafumi, Kaczkowski, Bogumil, Ohshima, Mitsuhiro, Matsuzaki, Hirotaka, Noguchi, Satoshi, Mikami, Yu, Lizio, Marina, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R R, Takai, Daiya, Yamaguchi, Yoko, Micke, Patrick, Saito, Akira, Nagase, Takahide
Published in Molecular cancer research (01.10.2017)
Published in Molecular cancer research (01.10.2017)
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Journal Article
Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection
Roy, Sugata, Guler, Reto, Parihar, Suraj P, Schmeier, Sebastian, Kaczkowski, Bogumil, Nishimura, Hajime, Shin, Jay W, Negishi, Yutaka, Ozturk, Mumin, Hurdayal, Ramona, Kubosaki, Atsutaka, Kimura, Yasumasa, de Hoon, Michiel J L, Hayashizaki, Yoshihide, Brombacher, Frank, Suzuki, Harukazu
Published in The Journal of immunology (1950) (15.06.2015)
Published in The Journal of immunology (1950) (15.06.2015)
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Journal Article
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis
Bagger, Frederik Otzen, Rapin, Nicolas, Theilgaard-Mönch, Kim, Kaczkowski, Bogumil, Thoren, Lina A, Jendholm, Johan, Winther, Ole, Porse, Bo T
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors
Hashimoto, Kosuke, Suzuki, Ana Maria, Dos Santos, Alexandre, Desterke, Christophe, Collino, Agnese, Ghisletti, Serena, Braun, Emilie, Bonetti, Alessandro, Fort, Alexandre, Qin, Xian-Yang, Radaelli, Enrico, Kaczkowski, Bogumil, Forrest, Alistair R R, Kojima, Soichi, Samuel, Didier, Natoli, Gioacchino, Buendia, Marie Annick, Faivre, Jamila, Carninci, Piero
Published in Genome research (01.12.2015)
Published in Genome research (01.12.2015)
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Journal Article
Molecular profiling of high-level athlete skeletal muscle after acute endurance or resistance exercise - A systems biology approach
Reitzner, Stefan M, Emanuelsson, Eric B, Arif, Muhammad, Kaczkowski, Bogumil, Kwon, Andrew Tj, Mardinoglu, Adil, Arner, Erik, Chapman, Mark A, Sundberg, Carl Johan
Published in Molecular metabolism (Germany) (01.01.2024)
Published in Molecular metabolism (Germany) (01.01.2024)
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Journal Article
Inhibition of BCL2A1 by STAT5 inactivation overcomes resistance to targeted therapies of FLT3-ITD/D835 mutant AML
Yamatani, Kotoko, Ai, Tomohiko, Saito, Kaori, Suzuki, Koya, Hori, Atsushi, Kinjo, Sonoko, Ikeo, Kazuho, Ruvolo, Vivian, Zhang, Weiguo, Mak, Po Yee, Kaczkowski, Bogumil, Harada, Hironori, Katayama, Kazuhiro, Sugimoto, Yoshikazu, Myslinski, Jered, Hato, Takashi, Miida, Takashi, Konopleva, Marina, Hayashizaki, Yoshihide, Carter, Bing Z., Tabe, Yoko, Andreeff, Michael
Published in Translational oncology (01.04.2022)
Published in Translational oncology (01.04.2022)
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Journal Article
JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states
Handoko, Lusy, Kaczkowski, Bogumil, Hon, Chung-Chau, Lizio, Marina, Wakamori, Masatoshi, Matsuda, Takayoshi, Ito, Takuhiro, Jeyamohan, Prashanti, Sato, Yuko, Sakamoto, Kensaku, Yokoyama, Shigeyuki, Kimura, Hiroshi, Minoda, Aki, Umehara, Takashi
Published in Epigenetics (03.04.2018)
Published in Epigenetics (03.04.2018)
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Journal Article
MicroRNA expression profiling of the porcine developing brain
Podolska, Agnieszka, Kaczkowski, Bogumil, Kamp Busk, Peter, Søkilde, Rolf, Litman, Thomas, Fredholm, Merete, Cirera, Susanna
Published in PloS one (06.01.2011)
Published in PloS one (06.01.2011)
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Journal Article
Abstract 2897: Recurrent transcriptome alterations across multiple cancer types
Kaczkowski, Bogumil, Tanaka, Yuji, Kawaji, Hideya, Sandelin, Albin, Andersson, Robin, Itoh, Masayoshi, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R.R.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Journal Article
HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis
Bagger, Frederik Otzen, Rapin, Nicolas, Theilgaard-Mönch, Kim, Kaczkowski, Bogumil, Jendholm, Johan, Winther, Ole, Porse, Bo
Published in Blood (28.06.2012)
Published in Blood (28.06.2012)
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Journal Article
xcore: an R package for inference of gene expression regulators
Migdał, Maciej, Arakawa, Takahiro, Takizawa, Satoshi, Furuno, Masaaki, Suzuki, Harukazu, Arner, Erik, Winata, Cecilia Lanny, Kaczkowski, Bogumił
Published in BMC bioinformatics (11.01.2023)
Published in BMC bioinformatics (11.01.2023)
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Journal Article
Structural profiles of human miRNA families from pairwise clustering
Kaczkowski, Bogumił, Torarinsson, Elfar, Reiche, Kristin, Havgaard, Jakob Hull, Stadler, Peter F., Gorodkin, Jan
Published in Bioinformatics (01.02.2009)
Published in Bioinformatics (01.02.2009)
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Journal Article
A promoter-level mammalian expression atlas
Forrest, Alistair R R, Kawaji, Hideya, Rehli, Michael, Baillie, J Kenneth, de Hoon, Michiel J L, Haberle, Vanja, Lassmann, Timo, Kulakovskiy, Ivan V, Lizio, Marina, Itoh, Masayoshi, Andersson, Robin, Mungall, Christopher J, Meehan, Terrence F, Schmeier, Sebastian, Bertin, Nicolas, Jørgensen, Mette, Dimont, Emmanuel, Arner, Erik, Schmidl, Christian, Schaefer, Ulf, Medvedeva, Yulia A, Plessy, Charles, Vitezic, Morana, Severin, Jessica, Semple, Colin A, Ishizu, Yuri, Young, Robert S, Francescatto, Margherita, Alam, Intikhab, Albanese, Davide, Altschuler, Gabriel M, Arakawa, Takahiro, Archer, John A C, Arner, Peter, Babina, Magda, Rennie, Sarah, Balwierz, Piotr J, Beckhouse, Anthony G, Pradhan-Bhatt, Swati, Blake, Judith A, Blumenthal, Antje, Bodega, Beatrice, Bonetti, Alessandro, Briggs, James, Brombacher, Frank, Burroughs, A Maxwell, Califano, Andrea, Cannistraci, Carlo V, Carbajo, Daniel, Chen, Yun, Chierici, Marco, Ciani, Yari, Clevers, Hans C, Dalla, Emiliano, Davis, Carrie A, Detmar, Michael, Diehl, Alexander D, Dohi, Taeko, Drabløs, Finn, Edge, Albert S B, Edinger, Matthias, Ekwall, Karl, Endoh, Mitsuhiro, Enomoto, Hideki, Fagiolini, Michela, Fairbairn, Lynsey, Fang, Hai, Farach-Carson, Mary C, Faulkner, Geoffrey J, Favorov, Alexander V, Fisher, Malcolm E, Frith, Martin C, Fujita, Rie, Fukuda, Shiro, Furlanello, Cesare, Furino, Masaaki, Furusawa, Jun-ichi, Geijtenbeek, Teunis B, Gibson, Andrew P, Gingeras, Thomas, Goldowitz, Daniel, Gough, Julian, Guhl, Sven, Guler, Reto, Gustincich, Stefano, Ha, Thomas J, Hamaguchi, Masahide, Hara, Mitsuko, Harbers, Matthias, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Takehiro, Herlyn, Meenhard, Hitchens, Kelly J, Ho Sui, Shannan J, Hofmann, Oliver M, Hoof, Ilka, Hori, Furni, Huminiecki, Lukasz
Published in Nature (London) (27.03.2014)
Published in Nature (London) (27.03.2014)
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Journal Article
Functional annotation of human long noncoding RNAs via molecular phenotyping
Ramilowski, Jordan A, Yip, Chi Wai, Agrawal, Saumya, Chang, Jen-Chien, Ciani, Yari, Kulakovskiy, Ivan V, Mendez, Mickaël, Ooi, Jasmine Li Ching, Ouyang, John F, Parkinson, Nick, Petri, Andreas, Roos, Leonie, Severin, Jessica, Yasuzawa, Kayoko, Abugessaisa, Imad, Akalin, Altuna, Antonov, Ivan V, Arner, Erik, Bonetti, Alessandro, Bono, Hidemasa, Borsari, Beatrice, Brombacher, Frank, Cameron, Christopher JF, Cannistraci, Carlo Vittorio, Cardenas, Ryan, Cardon, Melissa, Chang, Howard, Dostie, Josée, Ducoli, Luca, Favorov, Alexander, Fort, Alexandre, Garrido, Diego, Gil, Noa, Gimenez, Juliette, Guler, Reto, Handoko, Lusy, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Kosuke, Hayatsu, Norihito, Heutink, Peter, Hirose, Tetsuro, Imada, Eddie L, Itoh, Masayoshi, Kaczkowski, Bogumil, Kanhere, Aditi, Kawabata, Emily, Kawaji, Hideya, Kawashima, Tsugumi, Kelly, S Thomas, Kojima, Miki, Kondo, Naoto, Koseki, Haruhiko, Kouno, Tsukasa, Kratz, Anton, Kurowska-Stolarska, Mariola, Kwon, Andrew Tae Jun, Leek, Jeffrey, Lennartsson, Andreas, Lizio, Marina, López-Redondo, Fernando, Luginbühl, Joachim, Maeda, Shiori, Makeev, Vsevolod J, Marchionni, Luigi, Medvedeva, Yulia A, Minoda, Aki, Müller, Ferenc, Muñoz-Aguirre, Manuel, Murata, Mitsuyoshi, Nishiyori, Hiromi, Nitta, Kazuhiro R, Noguchi, Shuhei, Noro, Yukihiko, Nurtdinov, Ramil, Okazaki, Yasushi, Orlando, Valerio, Paquette, Denis, Parr, Callum J C, Rackham, Owen J L, Rizzu, Patrizia, Sánchez Martinez, Diego Fernando, Sandelin, Albin, Sanjana, Pillay, Semple, Colin A M, Shibayama, Youtaro, Sivaraman, Divya M, Suzuki, Takahiro, Szumowski, Suzannah C, Tagami, Michihira, Taylor, Martin S, Terao, Chikashi, Thodberg, Malte, Thongjuea, Supat, Tripathi, Vidisha, Ulitsky, Igor, Verardo, Roberto, Vorontsov, Ilya E, Yamamoto, Chinatsu
Published in Genome research (01.07.2020)
Published in Genome research (01.07.2020)
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