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Protein interaction landscapes revealed by advanced in vivo cross-linking–mass spectrometry
Wheat, Andrew, Yu, Clinton, Wang, Xiaorong, Burke, Anthony M., Chemmama, Ilan E., Kaake, Robyn M., Baker, Peter, Rychnovsky, Scott D., Yang, Jing, Huang, Lan
Published in Proceedings of the National Academy of Sciences - PNAS (10.08.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (10.08.2021)
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Oxidative Stress-Mediated Regulation of Proteasome Complexes
Aiken, Charity T., Kaake, Robyn M., Wang, Xiaorong, Huang, Lan
Published in Molecular & cellular proteomics (01.05.2011)
Published in Molecular & cellular proteomics (01.05.2011)
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Proteomic Approaches to Study SARS-CoV‑2 Biology and COVID-19 Pathology
Haas, Paige, Muralidharan, Monita, Krogan, Nevan J, Kaake, Robyn M, Hüttenhain, Ruth
Published in Journal of proteome research (05.02.2021)
Published in Journal of proteome research (05.02.2021)
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Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13
Kim, Sun Kyung, Dickinson, Miles Sasha, Finer-Moore, Janet, Guan, Ziqiang, Kaake, Robyn M., Echeverria, Ignacia, Chen, Jen, Pulido, Ernst H., Sali, Andrej, Krogan, Nevan J., Rosenberg, Oren S., Stroud, Robert M.
Published in Nature structural & molecular biology (01.03.2023)
Published in Nature structural & molecular biology (01.03.2023)
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The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity
Rialdi, Alexander, Hultquist, Judd, Jimenez-Morales, David, Peralta, Zuleyma, Campisi, Laura, Fenouil, Romain, Moshkina, Natasha, Wang, Zhen Zhen, Laffleur, Brice, Kaake, Robyn M., McGregor, Michael J., Haas, Kelsey, Pefanis, Evangelos, Albrecht, Randy A., Pache, Lars, Chanda, Sumit, Jen, Joanna, Ochando, Jordi, Byun, Minji, Basu, Uttiya, García-Sastre, Adolfo, Krogan, Nevan, van Bakel, Harm, Marazzi, Ivan
Published in Cell (04.05.2017)
Published in Cell (04.05.2017)
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Signal-Induced Disassembly of the SCF Ubiquitin Ligase Complex by Cdc48/p97
Yen, James L., Flick, Karin, Papagiannis, Christie V., Mathur, Radhika, Tyrrell, An, Ouni, Ikram, Kaake, Robyn M., Huang, Lan, Kaiser, Peter
Published in Molecular cell (26.10.2012)
Published in Molecular cell (26.10.2012)
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CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells
Rathore, Ujjwal, Haas, Paige, Easwar Kumar, Vigneshwari, Hiatt, Joseph, Haas, Kelsey M., Bouhaddou, Mehdi, Swaney, Danielle L., Stevenson, Erica, Zuliani-Alvarez, Lorena, McGregor, Michael J., Turner-Groth, Autumn, Ochieng' Olwal, Charles, Bediako, Yaw, Braberg, Hannes, Soucheray, Margaret, Ott, Melanie, Eckhardt, Manon, Hultquist, Judd F., Marson, Alexander, Kaake, Robyn M., Krogan, Nevan J.
Published in mBio (10.04.2024)
Published in mBio (10.04.2024)
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Computational Prediction and Experimental Verification of New MAP Kinase Docking Sites and Substrates Including Gli Transcription Factors
Whisenant, Thomas C., Ho, David T., Benz, Ryan W., Rogers, Jeffrey S., Kaake, Robyn M., Gordon, Elizabeth A., Huang, Lan, Baldi, Pierre, Bardwell, Lee
Published in PLoS computational biology (01.08.2010)
Published in PLoS computational biology (01.08.2010)
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From systems to structure — using genetic data to model protein structures
Braberg, Hannes, Echeverria, Ignacia, Kaake, Robyn M., Sali, Andrej, Krogan, Nevan J.
Published in Nature reviews. Genetics (01.06.2022)
Published in Nature reviews. Genetics (01.06.2022)
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Mass Spectrometry-Based Proteomics Technologies to Define Endogenous Protein-Protein Interactions and Their Applications to Cancer and Viral Infectious Diseases
Yu, Clinton, Adavikolanu, Rithika, Kaake, Robyn M, Huang, Lan
Published in Mass spectrometry reviews (09.02.2025)
Published in Mass spectrometry reviews (09.02.2025)
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A systems approach to infectious disease
Eckhardt, Manon, Hultquist, Judd F., Kaake, Robyn M., Hüttenhain, Ruth, Krogan, Nevan J.
Published in Nature reviews. Genetics (01.06.2020)
Published in Nature reviews. Genetics (01.06.2020)
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De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking
Chen, Zhen, Shiozaki, Momoko, Haas, Kelsey M., Skinner, Will M., Zhao, Shumei, Guo, Caiying, Polacco, Benjamin J., Yu, Zhiheng, Krogan, Nevan J., Lishko, Polina V., Kaake, Robyn M., Vale, Ronald D., Agard, David A.
Published in Cell (09.11.2023)
Published in Cell (09.11.2023)
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A New in Vivo Cross-linking Mass Spectrometry Platform to Define Protein–Protein Interactions in Living Cells
Kaake, Robyn M., Wang, Xiaorong, Burke, Anthony, Yu, Clinton, Kandur, Wynne, Yang, Yingying, Novtisky, Eric J., Second, Tonya, Duan, Jicheng, Kao, Athit, Guan, Shenheng, Vellucci, Danielle, Rychnovsky, Scott D., Huang, Lan
Published in Molecular & cellular proteomics (01.12.2014)
Published in Molecular & cellular proteomics (01.12.2014)
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RNA Binding and Core Complexes Constitute the U-Insertion/Deletion Editosome
Aphasizheva, Inna, Zhang, Liye, Wang, Xiaorong, Kaake, Robyn M., Huang, Lan, Monti, Stefano, Aphasizhev, Ruslan
Published in Molecular and cellular biology (01.12.2014)
Published in Molecular and cellular biology (01.12.2014)
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Structural basis of CD4 downregulation by HIV-1 Nef
Kwon, Yonghwa, Kaake, Robyn M., Echeverria, Ignacia, Suarez, Marissa, Karimian Shamsabadi, Mohammad, Stoneham, Charlotte, Ramirez, Peter W., Kress, Jacob, Singh, Rajendra, Sali, Andrej, Krogan, Nevan, Guatelli, John, Jia, Xiaofei
Published in Nature structural & molecular biology (01.09.2020)
Published in Nature structural & molecular biology (01.09.2020)
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Protein Interaction Map of APOBEC3 Enzyme Family Reveals Deamination-Independent Role in Cellular Function
Jang, Gwendolyn M., Annan Sudarsan, Arun Kumar, Shayeganmehr, Arzhang, Prando Munhoz, Erika, Lao, Reanna, Gaba, Amit, Granadillo Rodríguez, Milaid, Love, Robin P., Polacco, Benjamin J., Zhou, Yuan, Krogan, Nevan J., Kaake, Robyn M., Chelico, Linda
Published in Molecular & cellular proteomics (01.05.2024)
Published in Molecular & cellular proteomics (01.05.2024)
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EpCAM homo-oligomerization is not the basis for its role in cell-cell adhesion
Gaber, Aljaž, Kim, Seung Joong, Kaake, Robyn M., Benčina, Mojca, Krogan, Nevan, Šali, Andrej, Pavšič, Miha, Lenarčič, Brigita
Published in Scientific reports (05.09.2018)
Published in Scientific reports (05.09.2018)
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Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host–Pathogen Complexes
Kaake, Robyn M., Echeverria, Ignacia, Kim, Seung Joong, Von Dollen, John, Chesarino, Nicholas M., Feng, Yuqing, Yu, Clinton, Ta, Hai, Chelico, Linda, Huang, Lan, Gross, John, Sali, Andrej, Krogan, Nevan J.
Published in Molecular & cellular proteomics (01.01.2021)
Published in Molecular & cellular proteomics (01.01.2021)
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