guidedNOMe-seq quantifies chromatin states at single allele resolution for hundreds of custom regions in parallel
Schwaiger, Michaela, Mohn, Fabio, Bühler, Marc, Kaaij, Lucas J. T
Published in BMC genomics (29.07.2024)
Published in BMC genomics (29.07.2024)
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Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans
Kamminga, Leonie M, van Wolfswinkel, Josien C, Luteijn, Maartje J, Kaaij, Lucas J T, Bagijn, Marloes P, Sapetschnig, Alexandra, Miska, Eric A, Berezikov, Eugene, Ketting, René F
Published in PLoS genetics (01.07.2012)
Published in PLoS genetics (01.07.2012)
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The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA
Splinter, Erik, de Wit, Elzo, Nora, Elphège P, Klous, Petra, van de Werken, Harmen J G, Zhu, Yun, Kaaij, Lucas J T, van Ijcken, Wilfred, Gribnau, Joost, Heard, Edith, de Laat, Wouter
Published in Genes & development (01.07.2011)
Published in Genes & development (01.07.2011)
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Journal Article
DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus
Kaaij, Lucas TJ, van de Wetering, Marc, Fang, Fang, Decato, Benjamin, Molaro, Antoine, van de Werken, Harmen JG, van Es, Johan H, Schuijers, Jurian, de Wit, Elzo, de Laat, Wouter, Hannon, Gregory J, Clevers, Hans C, Smith, Andrew D, Ketting, René F
Published in Genome biology (28.05.2013)
Published in Genome biology (28.05.2013)
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Journal Article
Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish
Huang, Hsin-Yi, Houwing, Saskia, Kaaij, Lucas J T, Meppelink, Amanda, Redl, Stefan, Gauci, Sharon, Vos, Harmjan, Draper, Bruce W, Moens, Cecilia B, Burgering, Boudewijn M, Ladurner, Peter, Krijgsveld, Jeroen, Berezikov, Eugene, Ketting, René F
Published in The EMBO journal (17.08.2011)
Published in The EMBO journal (17.08.2011)
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Journal Article
PID-1 is a novel factor that operates during 21U-RNA biogenesis in Caenorhabditis elegans
de Albuquerque, Bruno F M, Luteijn, Maartje J, Cordeiro Rodrigues, Ricardo J, van Bergeijk, Petra, Waaijers, Selma, Kaaij, Lucas J T, Klein, Holger, Boxem, Mike, Ketting, René F
Published in Genes & development (01.04.2014)
Published in Genes & development (01.04.2014)
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Journal Article
The ChAHP Complex Counteracts Chromatin Looping at CTCF Sites that Emerged from SINE Expansions in Mouse
Kaaij, Lucas J.T., Mohn, Fabio, van der Weide, Robin H., de Wit, Elzo, Bühler, Marc
Published in Cell (05.09.2019)
Published in Cell (05.09.2019)
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Journal Article
Enhancers reside in a unique epigenetic environment during early zebrafish development
Kaaij, Lucas J. T., Mokry, Michal, Zhou, Meng, Musheev, Michael, Geeven, Geert, Melquiond, Adrien S. J., de Jesus Domingues, António M., de Laat, Wouter, Niehrs, Christof, Smith, Andrew D., Ketting, René F.
Published in Genome Biology (05.07.2016)
Published in Genome Biology (05.07.2016)
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Journal Article
Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development
Kaaij, Lucas J.T., van der Weide, Robin H., Ketting, René F., de Wit, Elzo
Published in Cell reports (Cambridge) (03.07.2018)
Published in Cell reports (Cambridge) (03.07.2018)
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Journal Article
Tdrd6a Regulates the Aggregation of Buc into Functional Subcellular Compartments that Drive Germ Cell Specification
Roovers, Elke F., Kaaij, Lucas J.T., Redl, Stefan, Bronkhorst, Alfred W., Wiebrands, Kay, de Jesus Domingues, António M., Huang, Hsin-Yi, Han, Chung-Ting, Riemer, Stephan, Dosch, Roland, Salvenmoser, Willi, Grün, Dominic, Butter, Falk, van Oudenaarden, Alexander, Ketting, René F.
Published in Developmental cell (06.08.2018)
Published in Developmental cell (06.08.2018)
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Journal Article
Hen1 is required for oocyte development and piRNA stability in zebrafish
Kamminga, Leonie M, Luteijn, Maartje J, den Broeder, Marjo J, Redl, Stefan, Kaaij, Lucas J T, Roovers, Elke F, Ladurner, Peter, Berezikov, Eugene, Ketting, René F
Published in The EMBO journal (03.11.2010)
Published in The EMBO journal (03.11.2010)
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Journal Article
Enhancers reside in a unique epigenetic environment during early zebrafish development
Kaaij, Lucas J T, Mokry, Michal, Zhou, Meng, Musheev, Michael, Geeven, Geert, Melquiond, Adrien S J, de Jesus Domingues, António M, de Laat, Wouter, Niehrs, Christof, Smith, Andrew D, Ketting, René F
Published in Genome Biology (05.07.2016)
Published in Genome Biology (05.07.2016)
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Journal Article
Hen1 is required for oocyte development and piRNA stability in zebrafish
Kamminga, Leonie M, Luteijn, Maartje J, den Broeder, Marjo J, Redl, Stefan, Kaaij, Lucas JT, Roovers, Elke F, Ladurner, Peter, Berezikov, Eugene, Ketting, René F
Published in The EMBO journal (04.01.2012)
Published in The EMBO journal (04.01.2012)
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Journal Article
Extremely stable Piwi-induced gene silencing in Caenorhabditis elegans: Extremely stable Piwi-induced gene silencing
Luteijn, Maartje J, van Bergeijk, Petra, Kaaij, Lucas J T, Almeida, Miguel Vasconcelos, Roovers, Elke F, Berezikov, Eugene, Ketting, René F
Published in The EMBO journal (15.08.2012)
Published in The EMBO journal (15.08.2012)
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Journal Article
Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish: Tdrd1 as a scaffold for Piwi-pathway activity
Huang, Hsin-Yi, Houwing, Saskia, Kaaij, Lucas J T, Meppelink, Amanda, Redl, Stefan, Gauci, Sharon, Vos, Harmjan, Draper, Bruce W, Moens, Cecilia B, Burgering, Boudewijn M, Ladurner, Peter, Krijgsveld, Jeroen, Berezikov, Eugene, Ketting, René F
Published in The EMBO journal (17.08.2011)
Published in The EMBO journal (17.08.2011)
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Journal Article