Sparse and compositionally robust inference of microbial ecological networks
Kurtz, Zachary D, Müller, Christian L, Miraldi, Emily R, Littman, Dan R, Blaser, Martin J, Bonneau, Richard A
Published in PLoS computational biology (01.05.2015)
Published in PLoS computational biology (01.05.2015)
Get full text
Journal Article
Helminth colonization is associated with increased diversity of the gut microbiota
Lee, Soo Ching, Tang, Mei San, Lim, Yvonne A L, Choy, Seow Huey, Kurtz, Zachary D, Cox, Laura M, Gundra, Uma Mahesh, Cho, Ilseung, Bonneau, Richard, Blaser, Martin J, Chua, Kek Heng, Loke, P'ng
Published in PLoS neglected tropical diseases (01.05.2014)
Published in PLoS neglected tropical diseases (01.05.2014)
Get full text
Journal Article
Helminth infection promotes colonization resistance via type 2 immunity
Ramanan, Deepshika, Bowcutt, Rowann, Lee, Soo Ching, San Tang, Mei, Kurtz, Zachary D., Ding, Yi, Honda, Kenya, Gause, William C., Blaser, Martin J., Bonneau, Richard A., Lim, Yvonne A.L., Loke, P'ng, Cadwell, Ken
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Published in Science (American Association for the Advancement of Science) (29.04.2016)
Get full text
Journal Article
Alternatively activated macrophages derived from monocytes and tissue macrophages are phenotypically and functionally distinct
Gundra, Uma Mahesh, Girgis, Natasha M., Ruckerl, Dominik, Jenkins, Stephen, Ward, Lauren N., Kurtz, Zachary D., Wiens, Kirsten E., Tang, Mei San, Basu-Roy, Upal, Mansukhani, Alka, Allen, Judith E., Loke, P'ng
Published in Blood (15.05.2014)
Published in Blood (15.05.2014)
Get full text
Journal Article
Fungi stabilize connectivity in the lung and skin microbial ecosystems
Tipton, Laura, Müller, Christian L, Kurtz, Zachary D, Huang, Laurence, Kleerup, Eric, Morris, Alison, Bonneau, Richard, Ghedin, Elodie
Published in Microbiome (15.01.2018)
Published in Microbiome (15.01.2018)
Get full text
Journal Article
A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity
Ruiz, Victoria E, Battaglia, Thomas, Kurtz, Zachary D, Bijnens, Luc, Ou, Amy, Engstrand, Isak, Zheng, Xuhui, Iizumi, Tadasu, Mullins, Briana J, Müller, Christian L, Cadwell, Ken, Bonneau, Richard, Perez-Perez, Guillermo I, Blaser, Martin J
Published in Nature communications (11.09.2017)
Published in Nature communications (11.09.2017)
Get full text
Journal Article
Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
Mahana, Douglas, Trent, Chad M, Kurtz, Zachary D, Bokulich, Nicholas A, Battaglia, Thomas, Chung, Jennifer, Müller, Christian L, Li, Huilin, Bonneau, Richard A, Blaser, Martin J
Published in Genome medicine (27.04.2016)
Published in Genome medicine (27.04.2016)
Get full text
Journal Article
Oxalobacter formigenes-associated host features and microbial community structures examined using the American Gut Project
Liu, Menghan, Koh, Hyunwook, Kurtz, Zachary D, Battaglia, Thomas, PeBenito, Amanda, Li, Huilin, Nazzal, Lama, Blaser, Martin J
Published in Microbiome (25.08.2017)
Published in Microbiome (25.08.2017)
Get full text
Journal Article
Correction: Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota
Lee, Soo Ching, Tang, Mei San, Lim, Yvonne A L, Choy, Seow Huey, Kurtz, Zachary D, Cox, Laura M, Gundra, Uma Mahesh, Cho, Ilseung, Bonneau, Richard, Blaser, Martin J, Chua, Kek Heng, Loke, P'ng
Published in PLoS neglected tropical diseases (07.04.2021)
Published in PLoS neglected tropical diseases (07.04.2021)
Get full text
Journal Article
Glycosuria Alters Uropathogenic Escherichia coli Global Gene Expression and Virulence
Islam, Md Jahirul, Bagale, Kamal, John, Preeti P, Kurtz, Zachary, Kulkarni, Ritwij
Published in mSphere (29.06.2022)
Published in mSphere (29.06.2022)
Get full text
Journal Article
Lung microbiome and host immune tone in subjects with idiopathic pulmonary fibrosis treated with inhaled interferon-γ
Wang, Jing, Lesko, Melissa, Badri, Michelle H, Kapoor, Bianca C, Wu, Benjamin G, Li, Yonghua, Smaldone, Gerald C, Bonneau, Richard, Kurtz, Zachary D, Condos, Rany, Segal, Leopoldo N
Published in ERJ open research (01.07.2017)
Published in ERJ open research (01.07.2017)
Get full text
Journal Article
A multiple view stereo benchmark for satellite imagery
Bosch, Marc, Kurtz, Zachary, Hagstrom, Shea, Brown, Myron
Published in 2016 IEEE Applied Imagery Pattern Recognition Workshop (AIPR) (01.10.2016)
Published in 2016 IEEE Applied Imagery Pattern Recognition Workshop (AIPR) (01.10.2016)
Get full text
Conference Proceeding
Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota: e2880
Lee, Soo Ching, Tang, Mei San, Lim, Yvonne AL, Choy, Seow Huey, Kurtz, Zachary D, Cox, Laura M, Gundra, Uma Mahesh, Cho, Ilseung, Bonneau, Richard, Blaser, Martin J, Chua, Kek Heng, Loke, ng
Published in PLoS neglected tropical diseases (01.05.2014)
Published in PLoS neglected tropical diseases (01.05.2014)
Get full text
Journal Article
Test Suites as a Source of Training Data for Static Analysis Alert Classifiers
Flynn, Lori, Snavely, William, Kurtz, Zachary
Published in 2021 IEEE/ACM International Conference on Automation of Software Test (AST) (01.05.2021)
Published in 2021 IEEE/ACM International Conference on Automation of Software Test (AST) (01.05.2021)
Get full text
Conference Proceeding