Rewiring of Genetic Networks in Response to DNA Damage
Bandyopadhyay, Sourav, Mehta, Monika, Kuo, Dwight, Sung, Min-Kyung, Chuang, Ryan, Jaehnig, Eric J, Bodenmiller, Bernd, Licon, Katherine, Copeland, Wilbert, Shales, Michael, Fiedler, Dorothea, Dutkowski, Janusz, Guénolé, Aude, van Attikum, Haico, Shokat, Kevan M, Kolodner, Richard D, Huh, Won-Ki, Aebersold, Ruedi, Keogh, Michael-Christopher, Krogan, Nevan J, Ideker, Trey
Published in Science (American Association for the Advancement of Science) (03.12.2010)
Published in Science (American Association for the Advancement of Science) (03.12.2010)
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Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
Chang, Katherine Noelani, Zhong, Shan, Weirauch, Matthew T, Hon, Gary, Pelizzola, Mattia, Li, Hai, Huang, Shao-Shan Carol, Schmitz, Robert J, Urich, Mark A, Kuo, Dwight, Nery, Joseph R, Qiao, Hong, Yang, Ally, Jamali, Abdullah, Chen, Huaming, Ideker, Trey, Ren, Bing, Bar-Joseph, Ziv, Hughes, Timothy R, Ecker, Joseph R
Published in eLife (11.06.2013)
Published in eLife (11.06.2013)
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NULISA: a proteomic liquid biopsy platform with attomolar sensitivity and high multiplexing
Feng, Wei, Beer, Joanne C., Hao, Qinyu, Ariyapala, Ishara S., Sahajan, Aparna, Komarov, Andrei, Cha, Katie, Moua, Mason, Qiu, Xiaolei, Xu, Xiaomei, Iyengar, Shweta, Yoshimura, Thu, Nagaraj, Rajini, Wang, Li, Yu, Ming, Engel, Kate, Zhen, Lucas, Xue, Wen, Lee, Chen-jung, Park, Chan Ho, Peng, Cheng, Zhang, Kaiyuan, Grzybowski, Adrian, Hahm, Johnnie, Schmidt, Susanne V., Odainic, Alexandru, Spitzer, Jasper, Buddika, Kasun, Kuo, Dwight, Fang, Lei, Zhang, Bingqing, Chen, Steve, Latz, Eicke, Yin, Yiyuan, Luo, Yuling, Ma, Xiao-Jun
Published in Nature communications (09.11.2023)
Published in Nature communications (09.11.2023)
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Coevolution within a transcriptional network by compensatory trans and cis mutations
Kuo, Dwight, Licon, Katherine, Bandyopadhyay, Sourav, Chuang, Ryan, Luo, Colin, Catalana, Justin, Ravasi, Timothy, Tan, Kai, Ideker, Trey
Published in Genome research (01.12.2010)
Published in Genome research (01.12.2010)
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Checkpoint Kinases Regulate a Global Network of Transcription Factors in Response to DNA Damage
Jaehnig, Eric J., Kuo, Dwight, Hombauer, Hans, Ideker, Trey G., Kolodner, Richard D.
Published in Cell reports (Cambridge) (11.07.2013)
Published in Cell reports (Cambridge) (11.07.2013)
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Retrotransposon long interspersed nucleotide element‐1 (LINE‐1) is activated during salamander limb regeneration
Zhu, Wei, Kuo, Dwight, Nathanson, Jason, Satoh, Akira, Pao, Gerald M., Yeo, Gene W., Bryant, Susan V., Voss, S. Randal, Gardiner, David M., Hunter, Tony
Published in Development, growth & differentiation (01.09.2012)
Published in Development, growth & differentiation (01.09.2012)
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Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli
McKee, Adrienne E, Rutherford, Becky J, Chivian, Dylan C, Baidoo, Edward K, Juminaga, Darmawi, Kuo, Dwight, Benke, Peter I, Dietrich, Jeffrey A, Ma, Suzanne M, Arkin, Adam P, Petzold, Christopher J, Adams, Paul D, Keasling, Jay D, Chhabra, Swapnil R
Published in Microbial cell factories (13.06.2012)
Published in Microbial cell factories (13.06.2012)
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Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering
Kuo, Dwight, Tan, Kai, Zinman, Guy, Ravasi, Timothy, Bar-Joseph, Ziv, Ideker, Trey
Published in Genome biology (23.07.2010)
Published in Genome biology (23.07.2010)
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Cross-Platform Comparison of Highly Sensitive Immunoassays for Inflammatory Markers in a COVID-19 Cohort
Abe, Koji, Beer, Joanne C, Nguyen, Tran, Ariyapala, Ishara S, Holmes, Tyson H, Feng, Wei, Zhang, Bingqing, Kuo, Dwight, Luo, Yuling, Ma, Xiao-Jun, Maecker, Holden T
Published in The Journal of immunology (1950) (01.04.2024)
Published in The Journal of immunology (1950) (01.04.2024)
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Hierarchical Modularity and the Evolution of Genetic Interactomes across Species
Ryan, Colm J., Roguev, Assen, Patrick, Kristin, Xu, Jiewei, Jahari, Harlizawati, Tong, Zongtian, Beltrao, Pedro, Shales, Michael, Qu, Hong, Collins, Sean R., Kliegman, Joseph I., Jiang, Lingli, Kuo, Dwight, Tosti, Elena, Kim, Hyun-Soo, Edelmann, Winfried, Keogh, Michael-Christopher, Greene, Derek, Tang, Chao, Cunningham, Pádraig, Shokat, Kevan M., Cagney, Gerard, Svensson, J. Peter, Guthrie, Christine, Espenshade, Peter J., Ideker, Trey, Krogan, Nevan J.
Published in Molecular cell (08.06.2012)
Published in Molecular cell (08.06.2012)
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DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1
Travesa, Anna, Kuo, Dwight, de Bruin, Robertus A M, Kalashnikova, Tatyana I, Guaderrama, Marisela, Thai, Kevin, Aslanian, Aaron, Smolka, Marcus B, Yates III, John R, Ideker, Trey, Wittenberg, Curt
Published in The EMBO journal (04.04.2012)
Published in The EMBO journal (04.04.2012)
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Journal Article
DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1: Regulation of MBF-target genes by genotoxic stress
Travesa, Anna, Kuo, Dwight, de Bruin, Robertus A M, Kalashnikova, Tatyana I, Guaderrama, Marisela, Thai, Kevin, Aslanian, Aaron, Smolka, Marcus B, Yates, John R, Ideker, Trey, Wittenberg, Curt
Published in The EMBO journal (04.04.2012)
Published in The EMBO journal (04.04.2012)
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Journal Article
Cross-platform comparison of highly-sensitive immunoassays for inflammatory markers in a COVID-19 cohort 1
Abe, Koji, Beer, Joanne C, Nguyen, Tran, Ariyapala, Ishara S, Holmes, Tyson H, Feng, Wei, Zhang, Bingqing, Kuo, Dwight, Luo, Yuling, Ma, Xiao-Jun, Maecker, Holden T
Published in bioRxiv : the preprint server for biology (26.10.2023)
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Published in bioRxiv : the preprint server for biology (26.10.2023)
Journal Article
NULISA: a novel proteomic liquid biopsy platform with attomolar sensitivity and high multiplexing
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Published in bioRxiv : the preprint server for biology (02.06.2023)
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Published in bioRxiv : the preprint server for biology (02.06.2023)
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Multiplex PCR detection of ALK, RET, and ROS fusions
Truong, Huan, Ma, Xiaoju Max, Chi, Javelin, Ordinario, Ellen, Lee, Michael, Rajamani, Jaya, Kuo, Dwight, Cheung, Cindy, Hillman, Grantland, Manohar, Chitra, Begovich, Ann
Year of Publication 28.03.2024
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Year of Publication 28.03.2024
Patent
MULTIPLEX PCR DETECTION OF ALK, RET, AND ROS FUSIONS
LEE, MICHAEL, TRUONG, HUAN, HILLMAN, GRANTLAND, CHEUNG, CINDY, CHI, JAVELIN, ORDINARIO, ELLEN, MA, XIAOJU MAX, RAJAMANI, JAYA, MANOHAR, CHITRA, BEGOVICH, ANN, KUO, DWIGHT
Year of Publication 23.01.2024
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Year of Publication 23.01.2024
Patent