Antimicrobial Resistance Genes in Bacteria Isolated From Japanese Honey, and Their Potential for Conferring Macrolide and Lincosamide Resistance in the American Foulbrood Pathogen Paenibacillus larvae
Okamoto, Mariko, Kumagai, Masahiko, Kanamori, Hiroyuki, Takamatsu, Daisuke
Published in Frontiers in microbiology (29.04.2021)
Published in Frontiers in microbiology (29.04.2021)
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Journal Article
Prevotella lacticifex sp. nov., isolated from the rumen of cows
Shinkai, Takumi, Ikeyama, Nao, Kumagai, Masahiko, Ohmori, Hideyuki, Sakamoto, Mitsuo, Ohkuma, Moriya, Mitsumori, Makoto
Published in International journal of systematic and evolutionary microbiology (07.03.2022)
Published in International journal of systematic and evolutionary microbiology (07.03.2022)
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Journal Article
Population dynamics in the Japanese Archipelago since the Pleistocene revealed by the complete mitochondrial genome sequences
Mizuno, Fuzuki, Gojobori, Jun, Kumagai, Masahiko, Baba, Hisao, Taniguchi, Yasuhiro, Kondo, Osamu, Matsushita, Masami, Matsushita, Takayuki, Matsuda, Fumihiko, Higasa, Koichiro, Hayashi, Michiko, Wang, Li, Kurosaki, Kunihiko, Ueda, Shintaroh
Published in Scientific reports (13.06.2021)
Published in Scientific reports (13.06.2021)
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Journal Article
Centromere evolution and CpG methylation during vertebrate speciation
Ichikawa, Kazuki, Tomioka, Shingo, Suzuki, Yuta, Nakamura, Ryohei, Doi, Koichiro, Yoshimura, Jun, Kumagai, Masahiko, Inoue, Yusuke, Uchida, Yui, Irie, Naoki, Takeda, Hiroyuki, Morishita, Shinich
Published in Nature communications (28.11.2017)
Published in Nature communications (28.11.2017)
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A calf with hind limb paralysis and dysstasia and a genome sequence analysis of an isolated Clostridium perfringens toxinotype E strain
MADA, Takashi, GOTO, Yo, KUMAGAI, Masahiko, SAKAI, Hiroaki, KANAMORI, Hiroyuki, TAKAMATSU, Daisuke
Published in Journal of Veterinary Medical Science (2023)
Published in Journal of Veterinary Medical Science (2023)
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Journal Article
CTCF looping is established during gastrulation in medaka embryos
Nakamura, Ryohei, Motai, Yuichi, Kumagai, Masahiko, Wike, Candice L, Nishiyama, Haruyo, Nakatani, Yoichiro, Durand, Neva C, Kondo, Kaori, Kondo, Takashi, Tsukahara, Tatsuya, Shimada, Atsuko, Cairns, Bradley R, Aiden, Erez Lieberman, Morishita, Shinichi, Takeda, Hiroyuki
Published in Genome research (01.06.2021)
Published in Genome research (01.06.2021)
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Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago
Nishimura, Luca, Tanino, Akio, Ajimoto, Mayumi, Katsumura, Takafumi, Ogawa, Motoyuki, Koganebuchi, Kae, Waku, Daisuke, Kumagai, Masahiko, Sugimoto, Ryota, Nakaoka, Hirofumi, Oota, Hiroki, Inoue, Ituro
Published in PloS one (24.01.2024)
Published in PloS one (24.01.2024)
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Investigation of the Genetic Diversity of a Rice Core Collection of Japanese Landraces using Whole-Genome Sequencing
Tanaka, Nobuhiro, Shenton, Matthew, Kawahara, Yoshihiro, Kumagai, Masahiko, Sakai, Hiroaki, Kanamori, Hiroyuki, Yonemaru, Jun-Ichi, Fukuoka, Shinichi, Sugimoto, Kazuhiko, Ishimoto, Masao, Wu, Jianzhong, Ebana, Kaworu
Published in Plant and cell physiology (04.02.2021)
Published in Plant and cell physiology (04.02.2021)
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Detection of non-reference porcine endogenous retrovirus loci in the Vietnamese native pig genome
Ishihara, Shinya, Kumagai, Masahiko, Arakawa, Aisaku, Taniguchi, Masaaki, Cuc, Ngo Thi Kim, Pham, Lan Doan, Mikawa, Satoshi, Kikuchi, Kazuhiro
Published in Scientific reports (21.06.2022)
Published in Scientific reports (21.06.2022)
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TASUKE: a web-based visualization program for large-scale resequencing data
Kumagai, Masahiko, Kim, Jungsok, Itoh, Ryutaro, Itoh, Takeshi
Published in Bioinformatics (15.07.2013)
Published in Bioinformatics (15.07.2013)
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Complete fusion of a transposon and herpesvirus created the Teratorn mobile element in medaka fish
Inoue, Yusuke, Saga, Tomonori, Aikawa, Takumi, Kumagai, Masahiko, Shimada, Atsuko, Kawaguchi, Yasushi, Naruse, Kiyoshi, Morishita, Shinichi, Koga, Akihiko, Takeda, Hiroyuki
Published in Nature communications (15.09.2017)
Published in Nature communications (15.09.2017)
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Imputation approach for deducing a complete mitogenome sequence from low-depth-coverage next-generation sequencing data: application to ancient remains from the Moon Pyramid, Mexico
Mizuno, Fuzuki, Kumagai, Masahiko, Kurosaki, Kunihiko, Hayashi, Michiko, Sugiyama, Saburo, Ueda, Shintaroh, Wang, Li
Published in Journal of human genetics (01.06.2017)
Published in Journal of human genetics (01.06.2017)
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Journal Article
Bioarchaeological study of ancient Teotihuacans based on complete mitochondrial genome sequences and diet isotopes
Mizuno, Fuzuki, Tokanai, Fuyuki, Kumagai, Masahiko, Ishiya, Koji, Sugiyama, Saburo, Hayashi, Michiko, Kurosaki, Kunihiko, Ueda, Shintaroh
Published in Annals of human biology (02.01.2023)
Published in Annals of human biology (02.01.2023)
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Same Locus for Non-shattering Seed Pod in Two Independently Domesticated Legumes, Vigna angularis and Vigna unguiculata
Takahashi, Yu, Kongjaimun, Alisa, Muto, Chiaki, Kobayashi, Yuki, Kumagai, Masahiko, Sakai, Hiroaki, Satou, Kazuhito, Teruya, Kuniko, Shiroma, Akino, Shimoji, Makiko, Hirano, Takashi, Isemura, Takehisa, Saito, Hiroki, Baba-Kasai, Akiko, Kaga, Akito, Somta, Prakit, Tomooka, Norihiko, Naito, Ken
Published in Frontiers in genetics (23.07.2020)
Published in Frontiers in genetics (23.07.2020)
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Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish
Cheung, Napo K M, Nakamura, Ryohei, Uno, Ayako, Kumagai, Masahiko, Fukushima, Hiroto S, Morishita, Shinichi, Takeda, Hiroyuki
Published in PLoS genetics (21.12.2017)
Published in PLoS genetics (21.12.2017)
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Development of an SSR marker-based genetic linkage map and identification of a QTL associated with flowering time in Eustoma
Kawakatsu, Kyoko, Yagi, Masafumi, Harada, Taro, Yamaguchi, Hiroyasu, Itoh, Takeshi, Kumagai, Masahiko, Itoh, Ryutaro, Numa, Hisataka, Katayose, Yuichi, Kanamori, Hiroyuki, Kurita, Kanako, Fukuta, Naoko
Published in Breeding Science (01.01.2021)
Published in Breeding Science (01.01.2021)
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Whole-genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting
Endo, Masaki, Kumagai, Masahiko, Motoyama, Ritsuko, Sasaki-Yamagata, Harumi, Mori-Hosokawa, Satomi, Hamada, Masao, Kanamori, Hiroyuki, Nagamura, Yoshiaki, Katayose, Yuichi, Itoh, Takeshi, Toki, Seiichi
Published in Plant and cell physiology (01.01.2015)
Published in Plant and cell physiology (01.01.2015)
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