Adverse Event extraction from Structured Product Labels using the Event-based Text-mining of Health Electronic Records (ETHER) system
Pandey, Abhishek, Kreimeyer, Kory, Foster, Matthew, Dang, Oanh, Ly, Thomas, Wang, Wei, Forshee, Richard, Botsis, Taxiarchis
Published in Health informatics journal (01.12.2019)
Published in Health informatics journal (01.12.2019)
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Journal Article
Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review
Kreimeyer, Kory, Foster, Matthew, Pandey, Abhishek, Arya, Nina, Halford, Gwendolyn, Jones, Sandra F, Forshee, Richard, Walderhaug, Mark, Botsis, Taxiarchis
Published in Journal of biomedical informatics (01.09.2017)
Published in Journal of biomedical informatics (01.09.2017)
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Journal Article
Trends and opportunities in computable clinical phenotyping: A scoping review
He, Ting, Belouali, Anas, Patricoski, Jessica, Lehmann, Harold, Ball, Robert, Anagnostou, Valsamo, Kreimeyer, Kory, Botsis, Taxiarchis
Published in Journal of biomedical informatics (01.04.2023)
Published in Journal of biomedical informatics (01.04.2023)
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Journal Article
Generation of an annotated reference standard for vaccine adverse event reports
Foster, Matthew, Pandey, Abhishek, Kreimeyer, Kory, Botsis, Taxiarchis
Published in Vaccine (05.07.2018)
Published in Vaccine (05.07.2018)
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Journal Article
Feature engineering and machine learning for causality assessment in pharmacovigilance: Lessons learned from application to the FDA Adverse Event Reporting System
Kreimeyer, Kory, Dang, Oanh, Spiker, Jonathan, Muñoz, Monica A., Rosner, Gary, Ball, Robert, Botsis, Taxiarchis
Published in Computers in biology and medicine (01.08.2021)
Published in Computers in biology and medicine (01.08.2021)
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Journal Article
Using Probabilistic Record Linkage of Structured and Unstructured Data to Identify Duplicate Cases in Spontaneous Adverse Event Reporting Systems
Kreimeyer, Kory, Menschik, David, Winiecki, Scott, Paul, Wendy, Barash, Faith, Woo, Emily Jane, Alimchandani, Meghna, Arya, Deepa, Zinderman, Craig, Forshee, Richard, Botsis, Taxiarchis
Published in Drug safety (01.07.2017)
Published in Drug safety (01.07.2017)
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Journal Article
Information Visualization Platform for Postmarket Surveillance Decision Support
Spiker, Jonathan, Kreimeyer, Kory, Dang, Oanh, Boxwell, Debra, Chan, Vicky, Cheng, Connie, Gish, Paula, Lardieri, Allison, Wu, Eileen, De, Suranjan, Naidoo, Jarushka, Lehmann, Harold, Rosner, Gary L., Ball, Robert, Botsis, Taxiarchis
Published in Drug safety (01.09.2020)
Published in Drug safety (01.09.2020)
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Journal Article
A new algorithmic approach for the extraction of temporal associations from clinical narratives with an application to medical product safety surveillance reports
Wang, Wei, Kreimeyer, Kory, Woo, Emily Jane, Ball, Robert, Foster, Matthew, Pandey, Abhishek, Scott, John, Botsis, Taxiarchis
Published in Journal of biomedical informatics (01.08.2016)
Published in Journal of biomedical informatics (01.08.2016)
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Journal Article
Increased Confidence in Deduplication of Drug Safety Reports with Natural Language Processing of Narratives at the US Food and Drug Administration
Kreimeyer, Kory, Dang, Oanh, Spiker, Jonathan, Gish, Paula, Weintraub, Jessica, Wu, Eileen, Ball, Robert, Botsis, Taxiarchis
Published in Frontiers in Drug Safety and Regulation (15.06.2022)
Published in Frontiers in Drug Safety and Regulation (15.06.2022)
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Journal Article
Decision support environment for medical product safety surveillance
Botsis, Taxiarchis, Jankosky, Christopher, Arya, Deepa, Kreimeyer, Kory, Foster, Matthew, Pandey, Abhishek, Wang, Wei, Zhang, Guangfan, Forshee, Richard, Goud, Ravi, Menschik, David, Walderhaug, Mark, Woo, Emily Jane, Scott, John
Published in Journal of biomedical informatics (01.12.2016)
Published in Journal of biomedical informatics (01.12.2016)
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Journal Article
FIRST SCIENCE WITH SAMI: A SERENDIPITOUSLY DISCOVERED GALACTIC WIND IN ESO 185-G031
FOGARTY, Lisa M. R, BLAND-HAWTHORN, Joss, BROUGH, Sarah, COLLESS, Matthew, ELLIS, Simon C, FARRELL, Tony, GOODWIN, Michael, HEALD, Ron, HOPKINS, Andrew M, HORTON, Anthony, HEATH JONES, D, LEE, Steve, CROOM, Scott M, LEWIS, Geraint, LOPEZ-SANCHEZ, Angel R, MIZIARSKI, Stan, TROWLAND, Holly, LEON-SAVAL, Sergio G, MIN, Seong-Sik, TRINH, Christopher, CECIL, Gerald, VEILLEUX, Sylvain, KREIMEYER, Kory, GREEN, Andrew W, BRYANT, Julia J, LAWRENCE, Jon S, RICHARDS, Samuel, ALLEN, James T, BAUER, Amanda E, BIRCHALL, Michael N
Published in The Astrophysical journal (20.12.2012)
Published in The Astrophysical journal (20.12.2012)
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Journal Article
Application of Natural Language Processing and Network Analysis Techniques to Post-market Reports for the Evaluation of Dose-related Anti-Thymocyte Globulin Safety Patterns
Botsis, Taxiarchis, Foster, Matthew, Arya, Nina, Kreimeyer, Kory, Pandey, Abhishek, Arya, Deepa
Published in Applied clinical informatics (01.04.2017)
Published in Applied clinical informatics (01.04.2017)
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Journal Article
Druggable genomic landscapes of high-grade gliomas
Ghanem, Paola, Fatteh, Maria, Kamson, David Olayinka, Balan, Archana, Chang, Michael, Tao, Jessica, Blakeley, Jaishri, Canzoniero, Jenna, Grossman, Stuart A, Marrone, Kristen, Schreck, Karisa C, Anagnostou, Valsamo
Published in Frontiers in medicine (08.12.2023)
Published in Frontiers in medicine (08.12.2023)
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Journal Article
Precision Oncology Core Data Model to Support Clinical Genomics Decision Making
Botsis, Taxiarchis, Murray, Joseph C, Ghanem, Paola, Balan, Archana, Kernagis, Alexander, Hardart, Kent, He, Ting, Spiker, Jonathan, Kreimeyer, Kory, Tao, Jessica, Baras, Alexander S, Yegnasubramanian, Srinivasan, Canzoniero, Jenna, Anagnostou, Valsamo
Published in JCO clinical cancer informatics (01.04.2023)
Published in JCO clinical cancer informatics (01.04.2023)
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Journal Article
Monitoring biomedical literature for post-market safety purposes by analyzing networks of text-based coded information
Botsis, Taxiarchis, Foster, Matthew, Kreimeyer, Kory, Pandey, Abhishek, Forshee, Richard
Published in AMIA Summits on Translational Science proceedings (2017)
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Published in AMIA Summits on Translational Science proceedings (2017)
Journal Article
Using Retrieval-Augmented Generation to Capture Molecularly-Driven Treatment Relationships for Precision Oncology
Kreimeyer, Kory, Canzoniero, Jenna V, Fatteh, Maria, Anagnostou, Valsamo, Botsis, Taxiarchis
Published in Studies in health technology and informatics (22.08.2024)
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Published in Studies in health technology and informatics (22.08.2024)
Journal Article
A Precision Oncology Platform to Support Genotype-Tailored Therapy Selection
Botsis, Taxiarchis, Spiker, Jonathan, Kreimeyer, Kory, Fatteh, Maria, Wehr, Jamie, Najjar, Mimi, Tao, Jessica, Xian, Rena, Imamovic, Nicole L, Pindzola, Ander, Dobs, Adrian, Canzoniero, Jenna, Anagnostou, Valsamo
Published in Studies in health technology and informatics (22.08.2024)
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Published in Studies in health technology and informatics (22.08.2024)
Journal Article
An Evaluation of Pretrained BERT Models for Comparing Semantic Similarity Across Unstructured Clinical Trial Texts
Patricoski, Jessica, Kreimeyer, Kory, Balan, Archana, Hardart, Kent, Tao, Jessica, Anagnostou, Valsamo, Botsis, Taxiarchis
Published in Studies in health technology and informatics (14.01.2022)
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Published in Studies in health technology and informatics (14.01.2022)
Journal Article