Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins
Srinivasan, Suhas, Cui, Hongzhu, Gao, Ziyang, Liu, Ming, Lu, Senbao, Mkandawire, Winnie, Narykov, Oleksandr, Sun, Mo, Korkin, Dmitry
Published in Viruses (25.03.2020)
Published in Viruses (25.03.2020)
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The Extent of Edgetic Perturbations in the Human Interactome Caused by Population-Specific Mutations
Cui, Hongzhu, Srinivasan, Suhas, Gao, Ziyang, Korkin, Dmitry
Published in Biomolecules (Basel, Switzerland) (27.12.2023)
Published in Biomolecules (Basel, Switzerland) (27.12.2023)
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Integrating diverse data for structure determination of macromolecular assemblies
Alber, Frank, Förster, Friedrich, Korkin, Dmitry, Topf, Maya, Sali, Andrej
Published in Annual review of biochemistry (01.01.2008)
Published in Annual review of biochemistry (01.01.2008)
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Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping
Kitsak, Maksim, Ganin, Alexander, Elmokashfi, Ahmed, Cui, Hongzhu, Eisenberg, Daniel A, Alderson, David L, Korkin, Dmitry, Linkov, Igor
Published in Nature communications (17.01.2023)
Published in Nature communications (17.01.2023)
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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes
Masonbrink, Rick, Maier, Tom R, Muppirala, Usha, Seetharam, Arun S, Lord, Etienne, Juvale, Parijat S, Schmutz, Jeremy, Johnson, Nathan T, Korkin, Dmitry, Mitchum, Melissa G, Mimee, Benjamin, den Akker, Sebastian Eves-van, Hudson, Matthew, Severin, Andrew J, Baum, Thomas J
Published in BMC genomics (07.02.2019)
Published in BMC genomics (07.02.2019)
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Journal Article
Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism
Corominas, Roser, Yang, Xinping, Lin, Guan Ning, Kang, Shuli, Shen, Yun, Ghamsari, Lila, Broly, Martin, Rodriguez, Maria, Tam, Stanley, Wanamaker, Shelly A, Fan, Changyu, Yi, Song, Tasan, Murat, Lemmens, Irma, Kuang, Xingyan, Zhao, Nan, Malhotra, Dheeraj, Michaelson, Jacob J, Vacic, Vladimir, Calderwood, Michael A, Roth, Frederick P, Tavernier, Jan, Horvath, Steve, Salehi-Ashtiani, Kourosh, Korkin, Dmitry, Sebat, Jonathan, Hill, David E, Hao, Tong, Vidal, Marc, Iakoucheva, Lilia M
Published in Nature communications (11.04.2014)
Published in Nature communications (11.04.2014)
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Journal Article
Correction: The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes
Masonbrink, Rick, Maier, Tom R, Muppirala, Usha, Seetharam, Arun S, Lord, Etienne, Juvale, Parijat S, Schmutz, Jeremy, Johnson, Nathan T, Korkin, Dmitry, Mitchum, Melissa G, Mimee, Benjamin, den Akker, Sebastian Eves-van, Hudson, Matthew, Severin, Andrew J, Baum, Thomas J
Published in BMC genomics (31.05.2024)
Published in BMC genomics (31.05.2024)
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Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions
Moretti, Rocco, Fleishman, Sarel J., Agius, Rudi, Torchala, Mieczyslaw, Bates, Paul A., Kastritis, Panagiotis L., Rodrigues, João P. G. L. M., Trellet, Mikaël, Bonvin, Alexandre M. J. J., Cui, Meng, Rooman, Marianne, Gillis, Dimitri, Dehouck, Yves, Moal, Iain, Romero-Durana, Miguel, Perez-Cano, Laura, Pallara, Chiara, Jimenez, Brian, Fernandez-Recio, Juan, Flores, Samuel, Pacella, Michael, Praneeth Kilambi, Krishna, Gray, Jeffrey J., Popov, Petr, Grudinin, Sergei, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Zhao, Nan, Korkin, Dmitry, Zhu, Xiaolei, Demerdash, Omar N. A., Mitchell, Julie C., Kanamori, Eiji, Tsuchiya, Yuko, Nakamura, Haruki, Lee, Hasup, Park, Hahnbeom, Seok, Chaok, Sarmiento, Jamica, Liang, Shide, Teraguchi, Shusuke, Standley, Daron M., Shimoyama, Hiromitsu, Terashi, Genki, Takeda-Shitaka, Mayuko, Iwadate, Mitsuo, Umeyama, Hideaki, Beglov, Dmitri, Hall, David R., Kozakov, Dima, Vajda, Sandor, Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Huang, Yangyu, Li, Haotian, Yang, Xiufeng, Ji, Xiaofeng, Liu, Shiyong, Xiao, Yi, Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Sheng-You, Zou, Xiaoqin, Velankar, Sameer, Janin, Joël, Wodak, Shoshana J., Baker, David
Published in Proteins, structure, function, and bioinformatics (01.11.2013)
Published in Proteins, structure, function, and bioinformatics (01.11.2013)
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Journal Article
Author Correction: Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism
Corominas, Roser, Yang, Xinping, Lin, Guan Ning, Kang, Shuli, Shen, Yun, Ghamsari, Lila, Broly, Martin, Rodriguez, Maria, Tam, Stanley, Wanamaker, Shelly A, Fan, Changyu, Yi, Song, Tasan, Murat, Lemmens, Irma, Kuang, Xingyan, Zhao, Nan, Malhotra, Dheeraj, Michaelson, Jacob J, Vacic, Vladimir, Calderwood, Michael A, Roth, Frederick P, Tavernier, Jan, Horvath, Steve, Salehi-Ashtiani, Kourosh, Korkin, Dmitry, Sebat, Jonathan, Hill, David E, Hao, Tong, Vidal, Marc, Iakoucheva, Lilia M
Published in Nature communications (02.02.2023)
Published in Nature communications (02.02.2023)
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Journal Article
Dual roles for the variable domain in protein trafficking and host-specific recognition of Heterodera glycines CLE effector proteins
Wang, Jianying, Lee, Chris, Replogle, Amy, Joshi, Sneha, Korkin, Dmitry, Hussey, Richard, Baum, Thomas J., Davis, Eric L., Wang, Xiaohong, Mitchum, Melissa G.
Published in The New phytologist (01.09.2010)
Published in The New phytologist (01.09.2010)
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Short-Stalked Prosthecomicrobium hirschii Cells Have a Caulobacter-Like Cell Cycle
Williams, Michelle, Hoffman, Michelle D, Daniel, Jeremy J, Madren, Seth M, Dhroso, Andi, Korkin, Dmitry, Givan, Scott A, Jacobson, Stephen C, Brown, Pamela J B
Published in Journal of bacteriology (01.04.2016)
Published in Journal of bacteriology (01.04.2016)
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Evidence of positive selection in mitochondrial complexes I and V of the African elephant
Finch, Tabitha M, Zhao, Nan, Korkin, Dmitry, Frederick, Katy H, Eggert, Lori S
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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Controlled modification of biomolecules by ultrashort laser pulses in polar liquids
Gruzdev, Vitaly, Korkin, Dmitry, Mooney, Brian P, Havelund, Jesper F, Møller, Ian Max, Thelen, Jay J
Published in Scientific reports (17.07.2017)
Published in Scientific reports (17.07.2017)
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