Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon
Le Luyer, Jérémy, Laporte, Martin, Beacham, Terry D., Kaukinen, Karia H., Withler, Ruth E., Leong, Jong S., Rondeau, Eric B., Koop, Ben F., Bernatchez, Louis
Published in Proceedings of the National Academy of Sciences - PNAS (05.12.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (05.12.2017)
Get full text
Journal Article
Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication
Gillard, Gareth B, Grønvold, Lars, Røsæg, Line L, Holen, Matilde Mengkrog, Monsen, Øystein, Koop, Ben F, Rondeau, Eric B, Gundappa, Manu Kumar, Mendoza, John, Macqueen, Daniel J, Rohlfs, Rori V, Sandve, Simen R, Hvidsten, Torgeir R
Published in Genome Biology (13.04.2021)
Published in Genome Biology (13.04.2021)
Get full text
Journal Article
Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish
Jacobs, Arne, Carruthers, Madeleine, Yurchenko, Andrey, Gordeeva, Natalia V, Alekseyev, Sergey S, Hooker, Oliver, Leong, Jong S, Minkley, David R, Rondeau, Eric B, Koop, Ben F, Adams, Colin E, Elmer, Kathryn R
Published in PLoS genetics (01.04.2020)
Published in PLoS genetics (01.04.2020)
Get full text
Journal Article
Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon
Rougemont, Quentin, Moore, Jean-Sébastien, Leroy, Thibault, Normandeau, Eric, Rondeau, Eric B, Withler, Ruth E, Van Doornik, Donald M, Crane, Penelope A, Naish, Kerry A, Garza, John Carlos, Beacham, Terry D, Koop, Ben F, Bernatchez, Louis
Published in PLoS genetics (26.08.2020)
Published in PLoS genetics (26.08.2020)
Get full text
Journal Article
The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei
Rondeau, Eric B, Minkley, David R, Leong, Jong S, Messmer, Amber M, Jantzen, Johanna R, von Schalburg, Kristian R, Lemon, Craig, Bird, Nathan H, Koop, Ben F
Published in PloS one (28.07.2014)
Published in PloS one (28.07.2014)
Get full text
Journal Article
Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome
Christensen, Kris A, Leong, Jong S, Sakhrani, Dionne, Biagi, Carlo A, Minkley, David R, Withler, Ruth E, Rondeau, Eric B, Koop, Ben F, Devlin, Robert H
Published in PloS one (05.04.2018)
Published in PloS one (05.04.2018)
Get full text
Journal Article
The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly
Christensen, Kris A, Rondeau, Eric B, Minkley, David R, Leong, Jong S, Nugent, Cameron M, Danzmann, Roy G, Ferguson, Moira M, Stadnik, Agnieszka, Devlin, Robert H, Muzzerall, Robin, Edwards, Michael, Davidson, William S, Koop, Ben F
Published in PloS one (13.09.2018)
Published in PloS one (13.09.2018)
Get full text
Journal Article
Sequencing the genome of the Atlantic salmon (Salmo salar)
Davidson, William S, Koop, Ben F, Jones, Steven J M, Iturra, Patricia, Vidal, Rodrigo, Maass, Alejandro, Jonassen, Inge, Lien, Sigbjorn, Omholt, Stig W
Published in Genome biology (30.09.2010)
Published in Genome biology (30.09.2010)
Get full text
Journal Article
Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates
Dijkstra, Johannes M, Grimholt, Unni, Leong, Jong, Koop, Ben F, Hashimoto, Keiichiro
Published in BMC evolutionary biology (26.11.2013)
Published in BMC evolutionary biology (26.11.2013)
Get full text
Journal Article
Limited genetic parallelism underlies recent, repeated incipient speciation in geographically proximate populations of an Arctic fish (Salvelinus alpinus)
Salisbury, Sarah J., McCracken, Gregory R., Perry, Robert, Keefe, Donald, Layton, Kara K.S., Kess, Tony, Nugent, Cameron M., Leong, Jong S., Bradbury, Ian R., Koop, Ben F., Ferguson, Moira M., Ruzzante, Daniel E.
Published in Molecular ecology (01.11.2020)
Published in Molecular ecology (01.11.2020)
Get full text
Journal Article
The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome
Christensen, Kris A, Rondeau, Eric B, Minkley, David R, Sakhrani, Dionne, Biagi, Carlo A, Flores, Anne-Marie, Withler, Ruth E, Pavey, Scott A, Beacham, Terry D, Godin, Theresa, Taylor, Eric B, Russello, Michael A, Devlin, Robert H, Koop, Ben F
Published in PloS one (29.10.2020)
Published in PloS one (29.10.2020)
Get full text
Journal Article
Convergent geographic patterns between grizzly bear population genetic structure and Indigenous language groups in coastal British Columbia, Canada
Henson, Lauren H., Balkenhol, Niko, Gustas, Robert, Adams, Megan, Walkus, Jennifer, Housty, William G., Stronen, Astrid V., Moody, Jason, Service, Christina, Reece, Donald, vonHoldt, Bridgett M., McKechnie, Iain, Koop, Ben F., Darimont, Chris T.
Published in Ecology and society (01.10.2021)
Published in Ecology and society (01.10.2021)
Get full text
Journal Article
Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome
Leong, Jong S, Jantzen, Stuart G, von Schalburg, Kristian R, Cooper, Glenn A, Messmer, Amber M, Liao, Nancy Y, Munro, Sarah, Moore, Richard, Holt, Robert A, Jones, Steven J M, Davidson, William S, Koop, Ben F
Published in BMC genomics (30.04.2010)
Published in BMC genomics (30.04.2010)
Get full text
Journal Article
Transcriptional responses in a Drosophila defensive symbiosis
Hamilton, Phineas T, Leong, Jong S, Koop, Ben F, Perlman, Steve J
Published in Molecular ecology (01.03.2014)
Published in Molecular ecology (01.03.2014)
Get full text
Journal Article
Re‐evaluating Coho salmon (Oncorhynchus kisutch) conservation units in Canada using genomic data
Xuereb, Amanda, Rougemont, Quentin, Dallaire, Xavier, Moore, Jean‐Sébastien, Normandeau, Eric, Bougas, Bérénice, Perreault‐Payette, Alysse, Koop, Ben F., Withler, Ruth, Beacham, Terry, Bernatchez, Louis
Published in Evolutionary applications (01.11.2022)
Published in Evolutionary applications (01.11.2022)
Get full text
Journal Article
The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle
Christensen, Kris A, Rondeau, Eric B, Sakhrani, Dionne, Biagi, Carlo A, Johnson, Hollie, Joshi, Jay, Flores, Anne-Marie, Leelakumari, Sreeja, Moore, Richard, Pandoh, Pawan K, Withler, Ruth E, Beacham, Terry D, Leggatt, Rosalind A, Tarpey, Carolyn M, Seeb, Lisa W, Seeb, James E, Jones, Steven J M, Devlin, Robert H, Koop, Ben F
Published in PloS one (17.12.2021)
Published in PloS one (17.12.2021)
Get full text
Journal Article
An update of the salmon louse (Lepeophtheirus salmonis) reference genome assembly
Joshi, Jay, Flores, Anne-Marie, Christensen, Kris A, Johnson, Hollie, Siah, Ahmed, Koop, Ben F
Published in G3 : genes - genomes - genetics (30.05.2022)
Published in G3 : genes - genomes - genetics (30.05.2022)
Get full text
Journal Article
Standardized IMGT® Nomenclature of Salmonidae IGH Genes, the Paradigm of Atlantic Salmon and Rainbow Trout: From Genomics to Repertoires
Magadan, Susana, Krasnov, Aleksei, Hadi-Saljoqi, Saida, Afanasyev, Sergey, Mondot, Stanislas, Lallias, Delphine, Castro, Rosario, Salinas, Irene, Sunyer, Oriol, Hansen, John, Koop, Ben F, Lefranc, Marie-Paule, Boudinot, Pierre
Published in Frontiers in immunology (12.11.2019)
Published in Frontiers in immunology (12.11.2019)
Get full text
Journal Article
Design and characterization of an 87k SNP genotyping array for Arctic charr (Salvelinus alpinus)
Nugent, Cameron M, Leong, Jong S, Christensen, Kris A, Rondeau, Eric B, Brachmann, Matthew K, Easton, Anne A, Ouellet-Fagg, Christine L, Crown, Michelle T T, Davidson, William S, Koop, Ben F, Danzmann, Roy G, Ferguson, Moira M
Published in PloS one (05.04.2019)
Published in PloS one (05.04.2019)
Get full text
Journal Article
Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids
de Boer, Johan G, Yazawa, Ryosuke, Davidson, William S, Koop, Ben F
Published in BMC genomics (16.11.2007)
Published in BMC genomics (16.11.2007)
Get full text
Journal Article