Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
Battle, Alexis, Mostafavi, Sara, Zhu, Xiaowei, Potash, James B, Weissman, Myrna M, McCormick, Courtney, Haudenschild, Christian D, Beckman, Kenneth B, Shi, Jianxin, Mei, Rui, Urban, Alexander E, Montgomery, Stephen B, Levinson, Douglas F, Koller, Daphne
Published in Genome research (01.01.2014)
Published in Genome research (01.01.2014)
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Journal Article
Conservation and divergence in the transcriptional programs of the human and mouse immune systems
Shay, Tal, Jojic, Vladimir, Zuk, Or, Rothamel, Katherine, Puyraimond-Zemmour, David, Feng, Ting, Wakamatsu, Ei, Benoist, Christophe, Koller, Daphne, Regev, Aviv, Consortium, ImmGen
Published in Proceedings of the National Academy of Sciences - PNAS (19.02.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (19.02.2013)
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Journal Article
Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes
Raj, Towfique, Rothamel, Katie, Mostafavi, Sara, Ye, Chun, Lee, Mark N., Replogle, Joseph M., Feng, Ting, Lee, Michelle, Asinovski, Natasha, Frohlich, Irene, Imboywa, Selina, Von Korff, Alina, Okada, Yukinori, Patsopoulos, Nikolaos A., Davis, Scott, McCabe, Cristin, Paik, Hyun-il, Srivastava, Gyan P., Raychaudhuri, Soumya, Hafler, David A., Koller, Daphne, Regev, Aviv, Hacohen, Nir, Mathis, Diane, Benoist, Christophe, Stranger, Barbara E., De Jager, Philip L.
Published in Science (American Association for the Advancement of Science) (02.05.2014)
Published in Science (American Association for the Advancement of Science) (02.05.2014)
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Journal Article
Real time motion capture using a single time-of-flight camera
Ganapathi, Varun, Plagemann, Christian, Koller, Daphne, Thrun, Sebastian
Published in 2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (01.06.2010)
Published in 2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (01.06.2010)
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Conference Proceeding
Sharing and Specificity of Co-expression Networks across 35 Human Tissues
Pierson, Emma, Koller, Daphne, Battle, Alexis, Mostafavi, Sara, Ardlie, Kristin G, Getz, Gad, Wright, Fred A, Kellis, Manolis, Volpi, Simona, Dermitzakis, Emmanouil T
Published in PLoS computational biology (01.05.2015)
Published in PLoS computational biology (01.05.2015)
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Journal Article
Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes
Hillenmeyer, Maureen E, Fung, Eula, Wildenhain, Jan, Pierce, Sarah E, Hoon, Shawn, Lee, William, Proctor, Michael, St.Onge, Robert P, Tyers, Mike, Koller, Daphne, Altman, Russ B, Davis, Ronald W, Nislow, Corey, Giaever, Guri
Published in Science (American Association for the Advancement of Science) (18.04.2008)
Published in Science (American Association for the Advancement of Science) (18.04.2008)
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Journal Article
Population genomics of human gene expression
Montgomery, Stephen, Dermitzakis, Emmanouil T, Bird, Christine P, Dunning, Mark, Nica, Alexandra C, Koller, Daphne, Forrest, Matthew S, Flicek, Paul, Deloukas, Panos, Tavaré, Simon, Stranger, Barbara E, Beazley, Claude, Dimas, Antigone, Ingle, Catherine E
Published in Nature genetics (01.10.2007)
Published in Nature genetics (01.10.2007)
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Journal Article
High-resolution antibody dynamics of vaccine-induced immune responses
Laserson, Uri, Vigneault, Francois, Gadala-Maria, Daniel, Yaari, Gur, Uduman, Mohamed, Heiden, Jason A. Vander, Kelton, William, Jung, Sang Taek, Liu, Yi, Laserson, Jonathan, Chari, Raj, Lee, Je-Hyuk, Bachelet, Ido, Hickey, Brendan, Lieberman-Aiden, Erez, Hanczaruk, Bozena, Simen, Birgitte B., Egholm, Michael, Koller, Daphne, Georgiou, George, Kleinstein, Steven H., Church, George M.
Published in Proceedings of the National Academy of Sciences - PNAS (01.04.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (01.04.2014)
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Journal Article
Apoptosis and other immune biomarkers predict influenza vaccine responsiveness
Furman, David, Jojic, Vladimir, Kidd, Brian, Shen‐Orr, Shai, Price, Jordan, Jarrell, Justin, Tse, Tiffany, Huang, Huang, Lund, Peder, Maecker, Holden T, Utz, Paul J, Dekker, Cornelia L, Koller, Daphne, Davis, Mark M
Published in Molecular systems biology (2013)
Published in Molecular systems biology (2013)
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Journal Article
Identification of transcriptional regulators in the mouse immune system
Jojic, Vladimir, Shay, Tal, Sylvia, Katelyn, Zuk, Or, Sun, Xin, Kang, Joonsoo, Regev, Aviv, Koller, Daphne, Best, Adam J, Knell, Jamie, Goldrath, Ananda, Joic, Vladimir, Cohen, Nadia, Brennan, Patrick, Brenner, Michael, Kim, Francis, Rao, Tata Nageswara, Wagers, Amy, Heng, Tracy, Ericson, Jeffrey, Rothamel, Katherine, Ortiz-Lopez, Adriana, Mathis, Diane, Benoist, Christophe, Bezman, Natalie A, Sun, Joseph C, Min-Oo, Gundula, Kim, Charlie C, Lanier, Lewis L, Miller, Jennifer, Brown, Brian, Merad, Miriam, Gautier, Emmanuel L, Jakubzick, Claudia, Randolph, Gwendalyn J, Monach, Paul, Blair, David A, Dustin, Michael L, Shinton, Susan A, Hardy, Richard R, Laidlaw, David, Collins, Jim, Gazit, Roi, Rossi, Derrick J, Malhotra, Nidhi, Kreslavsky, Taras, Fletcher, Anne, Elpek, Kutlu, Bellemarte-Pelletier, Angelique, Malhotra, Deepali, Turley, Shannon
Published in Nature immunology (01.06.2013)
Published in Nature immunology (01.06.2013)
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Journal Article
The effects of somatic hypermutation on neutralization and binding in the PGT121 family of broadly neutralizing HIV antibodies
Sok, Devin, Laserson, Uri, Laserson, Jonathan, Liu, Yi, Vigneault, Francois, Julien, Jean-Philippe, Briney, Bryan, Ramos, Alejandra, Saye, Karen F, Le, Khoa, Mahan, Alison, Wang, Shenshen, Kardar, Mehran, Yaari, Gur, Walker, Laura M, Simen, Birgitte B, St John, Elizabeth P, Chan-Hui, Po-Ying, Swiderek, Kristine, Kleinstein, Steven H, Kleinstein, Stephen H, Alter, Galit, Seaman, Michael S, Chakraborty, Arup K, Koller, Daphne, Wilson, Ian A, Church, George M, Burton, Dennis R, Poignard, Pascal
Published in PLoS pathogens (01.11.2013)
Published in PLoS pathogens (01.11.2013)
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Journal Article
Learning a prior on regulatory potential from eQTL data
Lee, Su-In, Dudley, Aimée M, Drubin, David, Silver, Pamela A, Krogan, Nevan J, Pe'er, Dana, Koller, Daphne
Published in PLoS genetics (01.01.2009)
Published in PLoS genetics (01.01.2009)
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Journal Article
Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge
Mostafavi, Sara, Battle, Alexis, Zhu, Xiaowei, Urban, Alexander E, Levinson, Douglas, Montgomery, Stephen B, Koller, Daphne
Published in PloS one (18.07.2013)
Published in PloS one (18.07.2013)
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Journal Article
Sfp1 Is a Stress- and Nutrient-Sensitive Regulator of Ribosomal Protein Gene Expression
Marion, Rosa M., Regev, Aviv, Segal, Eran, Barash, Yoseph, Koller, Daphne, Friedman, Nir, O'Shea, Erin K.
Published in Proceedings of the National Academy of Sciences - PNAS (05.10.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (05.10.2004)
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Journal Article