Production of itaconic acid from alkali pretreated lignin by dynamic two stage bioconversion
Elmore, Joshua R., Dexter, Gara N., Salvachúa, Davinia, Martinez-Baird, Jessica, Hatmaker, E. Anne, Huenemann, Jay D., Klingeman, Dawn M., Peabody, George L., Peterson, Darren J., Singer, Christine, Beckham, Gregg T., Guss, Adam M.
Published in Nature communications (15.04.2021)
Published in Nature communications (15.04.2021)
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Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity
Tian, Renmao, Ning, Daliang, He, Zhili, Zhang, Ping, Spencer, Sarah J, Gao, Shuhong, Shi, Weiling, Wu, Linwei, Zhang, Ya, Yang, Yunfeng, Adams, Benjamin G, Rocha, Andrea M, Detienne, Brittny L, Lowe, Kenneth A, Joyner, Dominique C, Klingeman, Dawn M, Arkin, Adam P, Fields, Matthew W, Hazen, Terry C, Stahl, David A, Alm, Eric J, Zhou, Jizhong
Published in Microbiome (06.04.2020)
Published in Microbiome (06.04.2020)
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Engineering glucose metabolism for enhanced muconic acid production in Pseudomonas putida KT2440
Bentley, Gayle J., Narayanan, Niju, Jha, Ramesh K., Salvachúa, Davinia, Elmore, Joshua R., Peabody, George L., Black, Brenna A., Ramirez, Kelsey, De Capite, Annette, Michener, William E., Werner, Allison Z., Klingeman, Dawn M., Schindel, Heidi S., Nelson, Robert, Foust, Lindsey, Guss, Adam M., Dale, Taraka, Johnson, Christopher W., Beckham, Gregg T.
Published in Metabolic engineering (01.05.2020)
Published in Metabolic engineering (01.05.2020)
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Quantum biological insights into CRISPR-Cas9 sgRNA efficiency from explainable-AI driven feature engineering
Noshay, Jaclyn M, Walker, Tyler, Alexander, William G, Klingeman, Dawn M, Romero, Jonathon, Walker, Angelica M, Prates, Erica, Eckert, Carrie, Irle, Stephan, Kainer, David, Jacobson, Daniel A
Published in Nucleic acids research (27.10.2023)
Published in Nucleic acids research (27.10.2023)
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Nitrogen addition alters soil fungal communities, but root fungal communities are resistant to change
Carrell, Alyssa A, Hicks, Brittany B, Sidelinger, Emilie, Johnston, Eric R, Jawdy, Sara S, Clark, Miranda M, Klingeman, Dawn M, Cregger, Melissa A
Published in Frontiers in microbiology (25.01.2023)
Published in Frontiers in microbiology (25.01.2023)
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Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum
Brown, Steven D., Guss, Adam M., Karpinets, Tatiana V., Parks, Jerry M., Smolin, Nikolai, Yang, Shihui, Land, Miriam L., Klingeman, Dawn M., Bhandiwad, Ashwini, Rodriguez, Miguel, Raman, Babu, Shao, Xiongjun, Mielenz, Jonathan R., Smith, Jeremy C., Keller, Martin, Lynd, Lee R.
Published in Proceedings of the National Academy of Sciences - PNAS (16.08.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (16.08.2011)
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Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides
BROWN, Steven D, UTTURKAR, Sagar M, KLINGEMAN, Dawn M, JOHNSON, Courtney M, MARTIN, Stanton L, LAND, Miriam L, LU, Tse-Yuan S, SCHADT, Christopher W, DOKTYCZ, Mitchel J, PELLETIER, Dale A
Published in Journal of Bacteriology (01.11.2012)
Published in Journal of Bacteriology (01.11.2012)
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Protoplast fusion in Bacillus species produces frequent, unbiased, genome-wide homologous recombination
Vasileva, Delyana P, Streich, Jared C, Burdick, Leah H, Klingeman, Dawn M, Chhetri, Hari B, Brelsford, Christa M, Ellis, J Christopher, Close, Dan M, Jacobson, Daniel A, Michener, Joshua K
Published in Nucleic acids research (24.06.2022)
Published in Nucleic acids research (24.06.2022)
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From wolves to humans: oral microbiome resistance to transfer across mammalian hosts
Podar, Nicholas A, Carrell, Alyssa A, Cassidy, Kira A, Klingeman, Dawn M, Yang, Zamin, Stahler, Erin A, Smith, Douglas W, Stahler, Daniel R, Podar, Mircea
Published in mBio (13.03.2024)
Published in mBio (13.03.2024)
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Journal Article
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis
Utturkar, Sagar M, Cude, W Nathan, Robeson, Jr, Michael S, Yang, Zamin K, Klingeman, Dawn M, Land, Miriam L, Allman, Steve L, Lu, Tse-Yuan S, Brown, Steven D, Schadt, Christopher W, Podar, Mircea, Doktycz, Mitchel J, Pelletier, Dale A
Published in Applied and environmental microbiology (15.09.2016)
Published in Applied and environmental microbiology (15.09.2016)
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Journal Article
Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells
Dumitrache, Alexandru, Klingeman, Dawn M., Natzke, Jace, Rodriguez Jr, Miguel, Giannone, Richard J., Hettich, Robert L., Davison, Brian H., Brown, Steven D.
Published in Scientific reports (27.02.2017)
Published in Scientific reports (27.02.2017)
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One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation
Chen, Huaihai, Yang, Zamin K, Yip, Dan, Morris, Reese H, Lebreux, Steven J, Cregger, Melissa A, Klingeman, Dawn M, Hui, Dafeng, Hettich, Robert L, Wilhelm, Steven W, Wang, Gangsheng, Löffler, Frank E, Schadt, Christopher W
Published in PloS one (18.06.2019)
Published in PloS one (18.06.2019)
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Journal Article
Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae
Yang, Shihui, Land, Miriam L., Klingeman, Dawn M., Pelletier, Dale A., Lu, Tse-Yuan S., Martin, Stanton L., Guo, Hao-Bo, Smith, Jeremy C., Brown, Steven D., Demain, Arnold L.
Published in Proceedings of the National Academy of Sciences - PNAS (08.06.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (08.06.2010)
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Journal Article
Nutrient Exposure Alters Microbial Composition, Structure, and Mercury Methylating Activity in Periphyton in a Contaminated Watershed
Carrell, Alyssa A, Schwartz, Grace E, Cregger, Melissa A, Gionfriddo, Caitlin M, Elias, Dwayne A, Wilpiszeski, Regina L, Klingeman, Dawn M, Wymore, Ann M, Muller, Katherine A, Brooks, Scott C
Published in Frontiers in microbiology (19.03.2021)
Published in Frontiers in microbiology (19.03.2021)
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Journal Article
A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies
Utturkar, Sagar M, Klingeman, Dawn M, Hurt, Jr, Richard A, Brown, Steven D
Published in Frontiers in microbiology (18.07.2017)
Published in Frontiers in microbiology (18.07.2017)
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Journal Article
Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85
Wu, Chia-wei, Spike, Thomas, Klingeman, Dawn M., Rodriguez, Miguel, Bremer, Virgil R., Brown, Steven D.
Published in Scientific reports (23.05.2017)
Published in Scientific reports (23.05.2017)
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Journal Article
Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum
Verbeke, Tobin J., Giannone, Richard J., Klingeman, Dawn M., Engle, Nancy L., Rydzak, Thomas, Guss, Adam M., Tschaplinski, Timothy J., Brown, Steven D., Hettich, Robert L., Elkins, James G.
Published in Scientific reports (23.02.2017)
Published in Scientific reports (23.02.2017)
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Phylogenomics and genetic analysis of solvent-producing Clostridium species
Jensen, Rasmus O., Schulz, Frederik, Roux, Simon, Klingeman, Dawn M., Mitchell, Wayne P., Udwary, Daniel, Moraïs, Sarah, Reynoso, Vinicio, Winkler, James, Nagaraju, Shilpa, De Tissera, Sashini, Shapiro, Nicole, Ivanova, Natalia, Reddy, T. B. K., Mizrahi, Itzhak, Utturkar, Sagar M., Bayer, Edward A., Woyke, Tanja, Mouncey, Nigel J., Jewett, Michael C., Simpson, Séan D., Köpke, Michael, Jones, David T., Brown, Steven D.
Published in Scientific data (01.05.2024)
Published in Scientific data (01.05.2024)
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Seasonality and longer-term development generate temporal dynamics in the Populus microbiome
Argiroff, William A, Carrell, Alyssa A, Klingeman, Dawn M, Dove, Nicholas C, Muchero, Wellington, Veach, Allison M, Wahl, Toni, Lebreux, Steven J, Webb, Amber B, Peyton, Kellie, Schadt, Christopher W, Cregger, Melissa A
Published in mSystems (29.02.2024)
Published in mSystems (29.02.2024)
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Elevated temperature alters microbial communities, but not decomposition rates, during 3 years of in situ peat decomposition
Roth, Spencer W, Griffiths, Natalie A, Kolka, Randall K, Oleheiser, Keith C, Carrell, Alyssa A, Klingeman, Dawn M, Seibert, Angela, Chanton, Jeffrey P, Hanson, Paul J, Schadt, Christopher W
Published in mSystems (26.10.2023)
Published in mSystems (26.10.2023)
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