Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing
Clark, Tyson A, Murray, Iain A, Morgan, Richard D, Kislyuk, Andrey O, Spittle, Kristi E, Boitano, Matthew, Fomenkov, Alexey, Roberts, Richard J, Korlach, Jonas
Published in Nucleic acids research (01.02.2012)
Published in Nucleic acids research (01.02.2012)
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Journal Article
Genomic fluidity: an integrative view of gene diversity within microbial populations
Kislyuk, Andrey O, Haegeman, Bart, Bergman, Nicholas H, Weitz, Joshua S
Published in BMC genomics (13.01.2011)
Published in BMC genomics (13.01.2011)
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Journal Article
Origins of the E. coli Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany
Rasko, David A, Webster, Dale R, Sahl, Jason W, Bashir, Ali, Boisen, Nadia, Scheutz, Flemming, Paxinos, Ellen E, Sebra, Robert, Chin, Chen-Shan, Iliopoulos, Dimitris, Klammer, Aaron, Peluso, Paul, Lee, Lawrence, Kislyuk, Andrey O, Bullard, James, Kasarskis, Andrew, Wang, Susanna, Eid, John, Rank, David, Redman, Julia C, Steyert, Susan R, Frimodt-Møller, Jakob, Struve, Carsten, Petersen, Andreas M, Krogfelt, Karen A, Nataro, James P, Schadt, Eric E, Waldor, Matthew K
Published in The New England journal of medicine (25.08.2011)
Published in The New England journal of medicine (25.08.2011)
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Journal Article
Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine
Song, Chun-Xiao, Clark, Tyson A, Lu, Xing-Yu, Kislyuk, Andrey, Dai, Qing, Turner, Stephen W, He, Chuan, Korlach, Jonas
Published in Nature methods (01.01.2012)
Published in Nature methods (01.01.2012)
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Journal Article
Unsupervised statistical clustering of environmental shotgun sequences
Kislyuk, Andrey, Bhatnagar, Srijak, Dushoff, Jonathan, Weitz, Joshua S
Published in BMC bioinformatics (02.10.2009)
Published in BMC bioinformatics (02.10.2009)
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Journal Article
Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases
Schadt, Eric E, Banerjee, Onureena, Fang, Gang, Feng, Zhixing, Wong, Wing H, Zhang, Xuegong, Kislyuk, Andrey, Clark, Tyson A, Luong, Khai, Keren-Paz, Alona, Chess, Andrew, Kumar, Vipin, Chen-Plotkin, Alice, Sondheimer, Neal, Korlach, Jonas, Kasarskis, Andrew
Published in Genome research (01.01.2013)
Published in Genome research (01.01.2013)
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Journal Article
Multiple whole-genome alignments without a reference organism
Dubchak, Inna, Poliakov, Alexander, Kislyuk, Andrey, Brudno, Michael
Published in Genome Research (01.04.2009)
Published in Genome Research (01.04.2009)
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Journal Article
A computational genomics pipeline for prokaryotic sequencing projects
Kislyuk, Andrey O., Katz, Lee S., Agrawal, Sonia, Hagen, Matthew S., Conley, Andrew B., Jayaraman, Pushkala, Nelakuditi, Viswateja, Humphrey, Jay C., Sammons, Scott A., Govil, Dhwani, Mair, Raydel D., Tatti, Kathleen M., Tondella, Maria L., Harcourt, Brian H., Mayer, Leonard W., Jordan, I. King
Published in Bioinformatics (01.08.2010)
Published in Bioinformatics (01.08.2010)
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Journal Article
Neisseria Base: a comparative genomics database for Neisseria meningitidis
Katz, Lee S, Humphrey, Jay C, Conley, Andrew B, Nelakuditi, Viswateja, Kislyuk, Andrey O, Agrawal, Sonia, Jayaraman, Pushkala, Harcourt, Brian H, Olsen-Rasmussen, Melissa A, Frace, Michael, Sharma, Nitya V, Mayer, Leonard W, Jordan, I King
Published in Database : the journal of biological databases and curation (01.01.2011)
Published in Database : the journal of biological databases and curation (01.01.2011)
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Journal Article
IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
Kalantar, Katrina L, Carvalho, Tiago, de Bourcy, Charles F A, Dimitrov, Boris, Dingle, Greg, Egger, Rebecca, Han, Julie, Holmes, Olivia B, Juan, Yun-Fang, King, Ryan, Kislyuk, Andrey, Lin, Michael F, Mariano, Maria, Morse, Todd, Reynoso, Lucia V, Cruz, David Rissato, Sheu, Jonathan, Tang, Jennifer, Wang, James, Zhang, Mark A, Zhong, Emily, Ahyong, Vida, Lay, Sreyngim, Chea, Sophana, Bohl, Jennifer A, Manning, Jessica E, Tato, Cristina M, DeRisi, Joseph L
Published in GigaScience (15.10.2020)
Published in GigaScience (15.10.2020)
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Journal Article
Web Resource
Conservation patterns in different functional sequence categories of divergent Drosophila species
Papatsenko, Dmitri, Kislyuk, Andrey, Levine, Michael, Dubchak, Inna
Published in Genomics (San Diego, Calif.) (01.10.2006)
Published in Genomics (San Diego, Calif.) (01.10.2006)
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Journal Article
Meningococcus genome informatics platform: a system for analyzing multilocus sequence typing data
Katz, Lee S, Bolen, Chris R, Harcourt, Brian H, Schmink, Susanna, Wang, Xin, Kislyuk, Andrey, Taylor, Robert T, Mayer, Leonard W, Jordan, I. King
Published in Nucleic acids research (01.07.2009)
Published in Nucleic acids research (01.07.2009)
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Journal Article
Conservation patterns in different functional sequence categoriesof divergent Drosophila species
Papatsenko, Dmitri, Kislyuk, Andrey, Levine, Michael, Dubchak, Inna
Published in Genomics (San Diego, Calif.) (01.10.2005)
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Published in Genomics (San Diego, Calif.) (01.10.2005)
Journal Article
Classification of nucleic acid templates
Travers, Kevin, Turner, Stephen, Korlach, Jonas, Sorenson, Jon, Tomaney, Austin B, Webster, Dale, Marks, Patrick, Heiner, Cheryl, Kislyuk, Andrey, Hanes, Jeremiah, Flusberg, Benjamin
Year of Publication 19.12.2023
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Year of Publication 19.12.2023
Patent
CLASSIFICATION OF NUCLEIC ACID TEMPLATES
Travers, Kevin, Turner, Stephen, Korlach, Jonas, Sorenson, Jon, Tomaney, Austin B, Webster, Dale, Marks, Patrick, Heiner, Cheryl, Kislyuk, Andrey, Hanes, Jeremiah, Flusberg, Benjamin
Year of Publication 24.08.2023
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Year of Publication 24.08.2023
Patent
CLASSIFICATION OF NUCLEIC ACID TEMPLATES
Travers, Kevin, Turner, Stephen, Korlach, Jonas, Sorenson, Jon, Tomaney, Austin B, Webster, Dale, Marks, Patrick, Heiner, Cheryl, Kislyuk, Andrey, Hanes, Jeremiah, Flusberg, Benjamin
Year of Publication 24.08.2023
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Year of Publication 24.08.2023
Patent
Identification of nucleic acid template-linked barcodes comprising nucleic acid modifications
Travers, Kevin, Korlach, Jonas, Sorenson, Jon, Marks, Patrick, Lyle, John, Vilfan, Igor Drasko, Kislyuk, Andrey, Hanes, Jeremiah, Lee, Jessica, Clark, Tyson A, Turner, Stephen, Tomaney, Austin B, Webster, Dale, Jia, Lei, Heiner, Cheryl, Wegener, Jeffrey, Flusberg, Benjamin
Year of Publication 21.05.2019
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Year of Publication 21.05.2019
Patent
IDseq - An Open Source Cloud-based Pipeline and Analysis Service for Metagenomic Pathogen Detection and Monitoring
Kalantar, Katrina L, Carvalho, Tiago, Charles F A De Bourcy, Dimitrov, Boris, Dingle, Greg, Egger, Rebecca, Han, Julie, Holmes, Olivia B, Yun-Fang, Juan, King, Ryan, Kislyuk, Andrey, Mariano, Maria, Reynoso, Lucia V, David Rissato Cruz, Sheu, Jonathan, Tang, Jennifer, Wang, James, Zhang, Mark A, Zhong, Emily, Ahyong, Vida, Lay, Sreyngim, Chea, Sophana, Bohl, Jennifer A, Manning, Jessica E, Tato, Cristina M, Derisi, Joseph L
Published in bioRxiv (18.04.2020)
Published in bioRxiv (18.04.2020)
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Paper
CLASSIFICATION OF NUCLEIC ACID TEMPLATES
WEBSTER DALE, LYLE JOHN, WEGENER JEFFREY, KORLACH JONAS, LEE JESSICA, TRAVERS KEVIN, JIA LEI, FLUSBERG BENJAMIN, VILFAN IGOR DRASKO, TURNER STEPHEN, HEINER CHERYL, SORENSON JON, KISLYUK ANDREY, HANES JEREMIAH, MARKS PATRICK, TOMANEY AUSTIN B, CLARK TYSON A
Year of Publication 02.06.2016
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Year of Publication 02.06.2016
Patent