The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations
Ru, Yuanbin, Kechris, Katerina J, Tabakoff, Boris, Hoffman, Paula, Radcliffe, Richard A, Bowler, Russell, Mahaffey, Spencer, Rossi, Simona, Calin, George A, Bemis, Lynne, Theodorescu, Dan
Published in Nucleic acids research (29.09.2014)
Published in Nucleic acids research (29.09.2014)
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Journal Article
Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values
PEDERSEN, Brent S, SCHWARTZ, David A, YANG, Ivana V, KECHRIS, Katerina J
Published in Bioinformatics (15.11.2012)
Published in Bioinformatics (15.11.2012)
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Journal Article
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration
Wieder, Cecilia, Cooke, Juliette, Frainay, Clement, Poupin, Nathalie, Bowler, Russell, Jourdan, Fabien, Kechris, Katerina J, Lai, Rachel Pj, Ebbels, Timothy
Published in PLoS computational biology (01.03.2024)
Published in PLoS computational biology (01.03.2024)
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Journal Article
Aptardi predicts polyadenylation sites in sample-specific transcriptomes using high-throughput RNA sequencing and DNA sequence
Lusk, Ryan, Stene, Evan, Banaei-Kashani, Farnoush, Tabakoff, Boris, Kechris, Katerina, Saba, Laura M.
Published in Nature communications (12.03.2021)
Published in Nature communications (12.03.2021)
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Journal Article
Multi-omics subtyping pipeline for chronic obstructive pulmonary disease
Gillenwater, Lucas A, Helmi, Shahab, Stene, Evan, Pratte, Katherine A, Zhuang, Yonghua, Schuyler, Ronald P, Lange, Leslie, Castaldi, Peter J, Hersh, Craig P, Banaei-Kashani, Farnoush, Bowler, Russell P, Kechris, Katerina J
Published in PloS one (25.08.2021)
Published in PloS one (25.08.2021)
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Journal Article
Reproducibility of mass spectrometry based metabolomics data
Ghosh, Tusharkanti, Philtron, Daisy, Zhang, Weiming, Kechris, Katerina, Ghosh, Debashis
Published in BMC bioinformatics (07.09.2021)
Published in BMC bioinformatics (07.09.2021)
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Journal Article
A prospective study of associations between in utero exposure to gestational diabetes mellitus and metabolomic profiles during late childhood and adolescence
Perng, Wei, Ringham, Brandy M., Smith, Harry A., Michelotti, Gregory, Kechris, Katerina M., Dabelea, Dana
Published in Diabetologia (01.02.2020)
Published in Diabetologia (01.02.2020)
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Journal Article
Perfluoroalkyl Substances during Pregnancy and Offspring Weight and Adiposity at Birth: Examining Mediation by Maternal Fasting Glucose in the Healthy Start Study
Starling, Anne P, Adgate, John L, Hamman, Richard F, Kechris, Katerina, Calafat, Antonia M, Ye, Xiaoyun, Dabelea, Dana
Published in Environmental health perspectives (01.06.2017)
Published in Environmental health perspectives (01.06.2017)
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Journal Article
Smccnet 2.0: a comprehensive tool for multi-omics network inference with shiny visualization
Liu, Weixuan, Vu, Thao, R Konigsberg, Iain, A Pratte, Katherine, Zhuang, Yonghua, Kechris, Katerina J
Published in BMC bioinformatics (24.08.2024)
Published in BMC bioinformatics (24.08.2024)
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Journal Article
TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes
Carpenter, Charlie M, Gillenwater, Lucas, Bowler, Russell, Kechris, Katerina, Ghosh, Debashis
Published in BMC bioinformatics (25.10.2023)
Published in BMC bioinformatics (25.10.2023)
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Journal Article
Prenatal exposure to per- and polyfluoroalkyl substances and infant growth and adiposity: the Healthy Start Study
Starling, Anne P., Adgate, John L., Hamman, Richard F., Kechris, Katerina, Calafat, Antonia M., Dabelea, Dana
Published in Environment international (01.10.2019)
Published in Environment international (01.10.2019)
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Journal Article
Mechanism-aware imputation: a two-step approach in handling missing values in metabolomics
Dekermanjian, Jonathan P, Shaddox, Elin, Nandy, Debmalya, Ghosh, Debashis, Kechris, Katerina
Published in BMC bioinformatics (16.05.2022)
Published in BMC bioinformatics (16.05.2022)
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Journal Article
Prenatal Exposure to Per- and Polyfluoroalkyl Substances, Umbilical Cord Blood DNA Methylation, and Cardio-Metabolic Indicators in Newborns: The Healthy Start Study
Starling, Anne P, Liu, Cuining, Shen, Guannan, Yang, Ivana V, Kechris, Katerina, Borengasser, Sarah J, Boyle, Kristen E, Zhang, Weiming, Smith, Harry A, Calafat, Antonia M, Hamman, Richard F, Adgate, John L, Dabelea, Dana
Published in Environmental health perspectives (01.12.2020)
Published in Environmental health perspectives (01.12.2020)
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Journal Article
Multiple biomarkers predict disease severity, progression and mortality in COPD
Zemans, Rachel L, Jacobson, Sean, Keene, Jason, Kechris, Katerina, Miller, Bruce E, Tal-Singer, Ruth, Bowler, Russell P
Published in Respiratory research (13.06.2017)
Published in Respiratory research (13.06.2017)
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Journal Article
High-Risk Human Papillomavirus E7 Alters Host DNA Methylome and Represses HLA-E Expression in Human Keratinocytes
Cicchini, Louis, Blumhagen, Rachel Z., Westrich, Joseph A., Myers, Mallory E., Warren, Cody J., Siska, Charlotte, Raben, David, Kechris, Katerina J., Pyeon, Dohun
Published in Scientific reports (16.06.2017)
Published in Scientific reports (16.06.2017)
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Journal Article
Sex-Specific Metabolite Biomarkers of NAFLD in Youth: A Prospective Study in the EPOCH Cohort
Perng, Wei, Francis, Ellen C, Smith, Harry A, Carey, John, Wang, Dongqing, Kechris, Katerina M, Dabelea, Dana
Published in The journal of clinical endocrinology and metabolism (01.09.2020)
Published in The journal of clinical endocrinology and metabolism (01.09.2020)
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Journal Article
Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease
Konigsberg, Iain R, Vu, Thao, Liu, Weixuan, Litkowski, Elizabeth M, Pratte, Katherine A, Vargas, Luciana B, Gilmore, Niles, Abdel-Hafiz, Mohamed, Manichaikul, Ani, Cho, Michael H, Hersh, Craig P, DeMeo, Dawn L, Banaei-Kashani, Farnoush, Bowler, Russell P, Lange, Leslie A, Kechris, Katerina J
Published in BMC genomics (02.09.2024)
Published in BMC genomics (02.09.2024)
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Journal Article
Meta-analysis of peripheral blood gene expression modules for COPD phenotypes
Reinhold, Dominik, Morrow, Jarrett D, Jacobson, Sean, Hu, Junxiao, Ringel, Benjamin, Seibold, Max A, Hersh, Craig P, Kechris, Katerina J, Bowler, Russell P
Published in PloS one (09.10.2017)
Published in PloS one (09.10.2017)
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Journal Article
NetSHy: network summarization via a hybrid approach leveraging topological properties
Vu, Thao, Litkowski, Elizabeth M, Liu, Weixuan, Pratte, Katherine A, Lange, Leslie, Bowler, Russell P, Banaei-Kashani, Farnoush, Kechris, Katerina J
Published in Bioinformatics (Oxford, England) (01.01.2023)
Published in Bioinformatics (Oxford, England) (01.01.2023)
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