Proviruses with identical sequences comprise a large fraction of the replication-competent HIV reservoir
Bui, John K, Sobolewski, Michele D, Keele, Brandon F, Spindler, Jonathan, Musick, Andrew, Wiegand, Ann, Luke, Brian T, Shao, Wei, Hughes, Stephen H, Coffin, John M, Kearney, Mary F, Mellors, John W
Published in PLoS pathogens (01.03.2017)
Published in PLoS pathogens (01.03.2017)
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Single-cell analysis of HIV-1 transcriptional activity reveals expression of proviruses in expanded clones during ART
Wiegand, Ann, Spindler, Jonathan, Hong, Feiyu F., Shao, Wei, Cyktor, Joshua C., Cillo, Anthony R., Halvas, Elias K., Coffin, John M., Mellors, John W., Kearney, Mary F.
Published in Proceedings of the National Academy of Sciences - PNAS (02.05.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (02.05.2017)
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Clonally expanded CD4⁺ T cells can produce infectious HIV-1 in vivo
Simonetti, Francesco R., Sobolewski, Michele D., Fyne, Elizabeth, Shao, Wei, Spindler, Jonathan, Hattori, Junko, Anderson, Elizabeth M., Watters, Sarah A., Hill, Shawn, Wu, Xiaolin, Wells, David, Su, Li, Luke, Brian T., Halvas, Elias K., Besson, Guillaume, Penrose, Kerri J., Yang, Zhiming, Kwan, Richard W., Van Waes, Carter, Uldrick, Thomas, Citrin, Deborah E., Kovacs, Joseph, Polis, Michael A., Rehm, Catherine A., Gorelick, Robert, Piatak, Michael, Keele, Brandon F., Kearney, Mary F., Coffin, John M., Hughes, Stephen H., Mellors, John W., Maldarelli, Frank
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2016)
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HIV-1 in lymph nodes is maintained by cellular proliferation during antiretroviral therapy
McManus, William R, Bale, Michael J, Spindler, Jonathan, Wiegand, Ann, Musick, Andrew, Patro, Sean C, Sobolewski, Michele D, Musick, Victoria K, Anderson, Elizabeth M, Cyktor, Joshua C, Halvas, Elias K, Shao, Wei, Wells, Daria, Wu, Xiaolin, Keele, Brandon F, Milush, Jeffrey M, Hoh, Rebecca, Mellors, John W, Hughes, Stephen H, Deeks, Steven G, Coffin, John M, Kearney, Mary F
Published in The Journal of clinical investigation (01.11.2019)
Published in The Journal of clinical investigation (01.11.2019)
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Immediate antiviral therapy appears to restrict resting CD4⁺ cell HIV-1 infection without accelerating the decay of latent infection
Archin, Nancie M., Vaidya, Naveen K., Kuruc, JoAnn D., Liberty, Abigail L., Wiegand, Ann, Kearney, Mary F., Cohen, Myron S., Coffin, John M., Bosch, Ronald J., Gay, Cynthia L., Eron, Joseph J., Margolis, David M., Perelson, Alan S.
Published in Proceedings of the National Academy of Sciences - PNAS (12.06.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (12.06.2012)
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HIV Expression in Infected T Cell Clones
Rausch, Jason W, Parvez, Shadab, Pathak, Sachi, Capoferri, Adam A, Kearney, Mary F
Published in Viruses (01.01.2024)
Published in Viruses (01.01.2024)
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Application of ultrasensitive digital ELISA for p24 enables improved evaluation of HIV-1 reservoir diversity and growth kinetics in viral outgrowth assays
Kuzmichev, Yury V, Lackman-Smith, Carol, Bakkour, Sonia, Wiegand, Ann, Bale, Michael J, Musick, Andrew, Bernstein, Wendy, Aronson, Naomi, Ake, Julie, Tovanabutra, Sodsai, Stone, Mars, Ptak, Roger G, Kearney, Mary F, Busch, Michael P, Wonderlich, Elizabeth R, Kulpa, Deanna A
Published in Scientific reports (06.07.2023)
Published in Scientific reports (06.07.2023)
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Integration in oncogenes plays only a minor role in determining the in vivo distribution of HIV integration sites before or during suppressive antiretroviral therapy
Coffin, John M, Bale, Michael J, Wells, Daria, Guo, Shuang, Luke, Brian, Zerbato, Jennifer M, Sobolewski, Michele D, Sia, Twan, Shao, Wei, Wu, Xiaolin, Maldarelli, Frank, Kearney, Mary F, Mellors, John W, Hughes, Stephen H
Published in PLoS pathogens (01.04.2021)
Published in PLoS pathogens (01.04.2021)
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Effector memory differentiation increases detection of replication-competent HIV-l in resting CD4+ T cells from virally suppressed individuals
Wonderlich, Elizabeth R, Subramanian, Krupa, Cox, Bryan, Wiegand, Ann, Lackman-Smith, Carol, Bale, Michael J, Stone, Mars, Hoh, Rebecca, Kearney, Mary F, Maldarelli, Frank, Deeks, Steven G, Busch, Michael P, Ptak, Roger G, Kulpa, Deanna A
Published in PLoS pathogens (14.10.2019)
Published in PLoS pathogens (14.10.2019)
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Mechanistic Analysis of the Broad Antiretroviral Resistance Conferred by HIV-1 Envelope Glycoprotein Mutations
Hikichi, Yuta, Van Duyne, Rachel, Pham, Phuong, Groebner, Jennifer L, Wiegand, Ann, Mellors, John W, Kearney, Mary F, Freed, Eric O
Published in mBio (12.01.2021)
Published in mBio (12.01.2021)
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Majority of CD4+T cells from peripheral blood of HIV-1—infected individuals contain only one HIV DNA molecule
Josefsson, Lina, King, Martin S., Makitalo, Barbro, Brännström, Johan, Shao, Wei, Maldarelli, Frank, Kearney, Mary F., Hu, Wei-Shau, Chen, Jianbo, Gaines, Hans, Mellors, John W., Albert, Jan, Coffin, John M., Palmer, Sarah E.
Published in Proceedings of the National Academy of Sciences - PNAS (05.07.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (05.07.2011)
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HIV-1 Persistence in Children during Suppressive ART
Katusiime, Mary Grace, Van Zyl, Gert U, Cotton, Mark F, Kearney, Mary F
Published in Viruses (12.06.2021)
Published in Viruses (12.06.2021)
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Ex vivo activation of CD4+ T-cells from donors on suppressive ART can lead to sustained production of infectious HIV-1 from a subset of infected cells
Bui, John K, Halvas, Elias K, Fyne, Elizabeth, Sobolewski, Michele D, Koontz, Dianna, Shao, Wei, Luke, Brian, Hong, Feiyu F, Kearney, Mary F, Mellors, John W
Published in PLoS pathogens (01.02.2017)
Published in PLoS pathogens (01.02.2017)
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HIV Infected T Cells Can Proliferate in vivo Without Inducing Expression of the Integrated Provirus
Musick, Andrew, Spindler, Jonathan, Boritz, Eli, Pérez, Liliana, Crespo-Vélez, Daniel, Patro, Sean C, Sobolewski, Michele D, Bale, Michael J, Reid, Carolyn, Keele, Brandon F, Capoferri, Adam, Shao, Wei, Wiegand, Ann, Simonetti, Francesco R, Mellors, John W, Hughes, Stephen H, Coffin, John M, Maldarelli, Frank, Kearney, Mary F
Published in Frontiers in microbiology (01.10.2019)
Published in Frontiers in microbiology (01.10.2019)
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Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection
Batorsky, Rebecca, Kearney, Mary F, Palmer, Sarah E, Maldarelli, Frank, Rouzine, Igor M, Coffin, John M
Published in Proceedings of the National Academy of Sciences - PNAS (05.04.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (05.04.2011)
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Data release: targeted systematic literature search for tick and tick-borne pathogen distributions in six countries in sub-Saharan Africa from 1901 to 2020
Lilak, Abigail A, Pecor, David B, Matulis, Graham, Potter, Alexander M, Wofford, Rachel N, Kearney, Mary F, Mitchell, Stephanie, Jaradat, Fatima, Kano, Arisa, Zimmerman, Dawn M, Hassell, James M, Kumsa, Bersissa, Kamau, Maureen, Linton, Yvonne-Marie, von Fricken, Michael E
Published in Parasites & vectors (22.02.2024)
Published in Parasites & vectors (22.02.2024)
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Dynamic Shifts in the HIV Proviral Landscape During Long Term Combination Antiretroviral Therapy: Implications for Persistence and Control of HIV Infections
Anderson, Elizabeth M, Simonetti, Francesco R, Gorelick, Robert J, Hill, Shawn, Gouzoulis, Monica A, Bell, Jennifer, Rehm, Catherine, Pérez, Liliana, Boritz, Eli, Wu, Xiaolin, Wells, Daria, Hughes, Stephen H, Rao, Venigalla, Coffin, John M, Kearney, Mary F, Maldarelli, Frank
Published in Viruses (25.01.2020)
Published in Viruses (25.01.2020)
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The largest HIV-1-infected T cell clones in children on long-term combination antiretroviral therapy contain solo LTRs
Botha, Johannes C, Demirov, Dimiter, Gordijn, Carli, Katusiime, Mary Grace, Bale, Michael J, Wu, Xiaolin, Wells, Daria, Hughes, Stephen H, Cotton, Mark F, Mellors, John W, Kearney, Mary F, van Zyl, Gert U
Published in mBio (31.08.2023)
Published in mBio (31.08.2023)
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