The MetaCyc database of metabolic pathways and enzymes - a 2019 update
Caspi, Ron, Billington, Richard, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
The MetaCyc database of metabolic pathways and enzymes
Caspi, Ron, Billington, Richard, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
The BioCyc collection of microbial genomes and metabolic pathways
Karp, Peter D, Billington, Richard, Caspi, Ron, Fulcher, Carol A, Latendresse, Mario, Kothari, Anamika, Keseler, Ingrid M, Krummenacker, Markus, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne M, Subhraveti, Pallavi
Published in Briefings in bioinformatics (19.07.2019)
Published in Briefings in bioinformatics (19.07.2019)
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Journal Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Caspi, Ron, Billington, Richard, Ferrer, Luciana, Foerster, Hartmut, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S, Karp, Peter D
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
Caspi, Ron, Altman, Tomer, Billington, Richard, Dreher, Kate, Foerster, Hartmut, Fulcher, Carol A, Holland, Timothy A, Keseler, Ingrid M, Kothari, Anamika, Kubo, Aya, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Ong, Quang, Paley, Suzanne, Subhraveti, Pallavi, Weaver, Daniel S, Weerasinghe, Deepika, Zhang, Peifen, Karp, Peter D
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics
Karp, Peter D, Midford, Peter E, Caspi, Ron, Khodursky, Arkady
Published in BMC genomics (16.03.2021)
Published in BMC genomics (16.03.2021)
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Journal Article
Revisiting the y-ome of Escherichia coli
Moore, Lisa R, Caspi, Ron, Boyd, Dana, Berkmen, Mehmet, Mackie, Amanda, Paley, Suzanne, Karp, Peter D
Published in Nucleic acids research (07.10.2024)
Published in Nucleic acids research (07.10.2024)
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Journal Article
The EcoCyc Database in 2021
Keseler, Ingrid M, Gama-Castro, Socorro, Mackie, Amanda, Billington, Richard, Bonavides-Martínez, César, Caspi, Ron, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Muñiz-Rascado, Luis, Ong, Wai Kit, Paley, Suzanne, Santos-Zavaleta, Alberto, Subhraveti, Pallavi, Tierrafría, Víctor H, Wolfe, Alan J, Collado-Vides, Julio, Paulsen, Ian T, Karp, Peter D
Published in Frontiers in microbiology (28.07.2021)
Published in Frontiers in microbiology (28.07.2021)
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Journal Article
The Comparative Genome Dashboard
Paley, Suzanne, Caspi, Ron, O'Maille, Paul, Karp, Peter D
Published in Frontiers in microbiology (31.07.2024)
Published in Frontiers in microbiology (31.07.2024)
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Journal Article
Optimal metabolic route search based on atom mappings
Latendresse, Mario, Krummenacker, Markus, Karp, Peter D
Published in Bioinformatics (Oxford, England) (15.07.2014)
Published in Bioinformatics (Oxford, England) (15.07.2014)
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Journal Article
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Caspi, Ron, Altman, Tomer, Dale, Joseph M, Dreher, Kate, Fulcher, Carol A, Gilham, Fred, Kaipa, Pallavi, Karthikeyan, Athikkattuvalasu S, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Mueller, Lukas A, Paley, Suzanne, Popescu, Liviu, Pujar, Anuradha, Shearer, Alexander G, Zhang, Peifen, Karp, Peter D
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Palsson, Bernhard Ø, Feist, Adam M, Henry, Christopher S, Reed, Jennifer L, Krummenacker, Markus, Joyce, Andrew R, Karp, Peter D, Broadbelt, Linda J, Hatzimanikatis, Vassily
Published in Molecular systems biology (2007)
Published in Molecular systems biology (2007)
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Journal Article
Construction and completion of flux balance models from pathway databases
Latendresse, Mario, Krummenacker, Markus, Trupp, Miles, Karp, Peter D.
Published in Bioinformatics (01.02.2012)
Published in Bioinformatics (01.02.2012)
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Journal Article