SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework
Lewinski, Martin, Bramkamp, Yannik, Köster, Tino, Staiger, Dorothee
Published in BMC bioinformatics (18.03.2020)
Published in BMC bioinformatics (18.03.2020)
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Journal Article
Spotlight on post-transcriptional control in the circadian system
Staiger, Dorothee, Köster, Tino
Published in Cellular and molecular life sciences : CMLS (01.01.2011)
Published in Cellular and molecular life sciences : CMLS (01.01.2011)
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Journal Article
Revealing the Arabidopsis AtGRP7 mRNA binding proteome by specific enhanced RNA interactome capture
Reichel, Marlene, Schmidt, Olga, Rettel, Mandy, Stein, Frank, Köster, Tino, Butter, Falk, Staiger, Dorothee
Published in BMC plant biology (14.06.2024)
Published in BMC plant biology (14.06.2024)
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Journal Article
Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2
Arribas-Hernández, Laura, Rennie, Sarah, Köster, Tino, Porcelli, Carlotta, Lewinski, Martin, Staiger, Dorothee, Andersson, Robin, Brodersen, Peter
Published in eLife (30.09.2021)
Published in eLife (30.09.2021)
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Journal Article
A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate
Foley, Shawn W., Gosai, Sager J., Wang, Dongxue, Selamoglu, Nur, Sollitti, Amelia C., Köster, Tino, Steffen, Alexander, Lyons, Eric, Daldal, Fevzi, Garcia, Benjamin A., Staiger, Dorothee, Deal, Roger B., Gregory, Brian D.
Published in Developmental cell (24.04.2017)
Published in Developmental cell (24.04.2017)
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Journal Article
Identification of Pri-miRNA Stem-Loop Interacting Proteins in Plants Using a Modified Version of the Csy4 CRISPR Endonuclease
Lüders, Janina, Winkel, Andreas R., Reichel, Marlene, Bitterer, Valentin W., Scheibe, Marion, Widmann, Christiane, Butter, Falk, Köster, Tino
Published in International journal of molecular sciences (11.08.2022)
Published in International journal of molecular sciences (11.08.2022)
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Journal Article
Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis
Köster, Tino, Meyer, Katja, Weinholdt, Claus, Smith, Lisa M, Lummer, Martina, Speth, Corinna, Grosse, Ivo, Weigel, Detlef, Staiger, Dorothee
Published in Nucleic acids research (02.09.2014)
Published in Nucleic acids research (02.09.2014)
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Journal Article
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana
Streitner, Corinna, Köster, Tino, Simpson, Craig G, Shaw, Paul, Danisman, Selahattin, Brown, John W S, Staiger, Dorothee
Published in Nucleic acids research (01.12.2012)
Published in Nucleic acids research (01.12.2012)
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Journal Article
RNA-Binding Proteins Revisited – The Emerging Arabidopsis mRNA Interactome
Köster, Tino, Marondedze, Claudius, Meyer, Katja, Staiger, Dorothee
Published in Trends in plant science (01.06.2017)
Published in Trends in plant science (01.06.2017)
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Journal Article
Marking RNA: m6A writers, readers, and functions in Arabidopsis
Reichel, Marlene, Köster, Tino, Staiger, Dorothee
Published in Journal of molecular cell biology (25.10.2019)
Published in Journal of molecular cell biology (25.10.2019)
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Journal Article
Salicylic acid‐dependent and ‐independent impact of an RNA‐binding protein on plant immunity
HACKMANN, CHRISTIAN, KORNELI, CHRISTIN, KUTYNIOK, MAGDALENE, KÖSTER, TINO, WIEDENLÜBBERT, MATTHIAS, MÜLLER, CAROLINE, STAIGER, DOROTHEE
Published in Plant, cell and environment (01.03.2014)
Published in Plant, cell and environment (01.03.2014)
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Journal Article
Arabidopsis thaliana GLYCINE RICH RNA‐BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation
Lewinski, Martin, Steffen, Alexander, Kachariya, Nitin, Elgner, Mareike, Schmal, Christoph, Messini, Niki, Köster, Tino, Reichel, Marlene, Sattler, Michael, Zarnack, Kathi, Staiger, Dorothee
Published in The Plant journal : for cell and molecular biology (01.04.2024)
Published in The Plant journal : for cell and molecular biology (01.04.2024)
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Journal Article
Mapping protein-RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2)
Lewinski, Martin, Brüggemann, Mirko, Köster, Tino, Reichel, Marlene, Bergelt, Thorsten, Meyer, Katja, König, Julian, Zarnack, Kathi, Staiger, Dorothee
Published in Nature protocols (01.04.2024)
Published in Nature protocols (01.04.2024)
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Journal Article