Protein–RNA interactions: new genomic technologies and perspectives
König, Julian, Zarnack, Kathi, Luscombe, Nicholas M., Ule, Jernej
Published in Nature reviews. Genetics (01.02.2012)
Published in Nature reviews. Genetics (01.02.2012)
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Journal Article
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
König, Julian, Zupan, Bla, Zarnack, Kathi, Kayikci, Melis, Curk, Toma, Luscombe, Nicholas M, Turner, Daniel J, Rot, Gregor, Ule, Jernej
Published in Nature structural & molecular biology (01.07.2010)
Published in Nature structural & molecular biology (01.07.2010)
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Journal Article
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43
Ule, Jernej, Tollervey, James R, Curk, Toma, Rogelj, Boris, Briese, Michael, Cereda, Matteo, Kayikci, Melis, König, Julian, Hortobágyi, Tibor, Nishimura, Agnes L, upunski, Vera, Patani, Rickie, Chandran, Siddharthan, Rot, Gregor, Zupan, Bla, Shaw, Christopher E
Published in Nature neuroscience (01.04.2011)
Published in Nature neuroscience (01.04.2011)
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Journal Article
iCLIP: Protein–RNA interactions at nucleotide resolution
Huppertz, Ina, Attig, Jan, D’Ambrogio, Andrea, Easton, Laura E., Sibley, Christopher R., Sugimoto, Yoichiro, Tajnik, Mojca, König, Julian, Ule, Jernej
Published in Methods (San Diego, Calif.) (01.02.2014)
Published in Methods (San Diego, Calif.) (01.02.2014)
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Journal Article
Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements
Zarnack, Kathi, König, Julian, Tajnik, Mojca, Martincorena, Iñigo, Eustermann, Sebastian, Stévant, Isabelle, Reyes, Alejandro, Anders, Simon, Luscombe, Nicholas M., Ule, Jernej
Published in Cell (31.01.2013)
Published in Cell (31.01.2013)
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Journal Article
Direct long-read RNA sequencing identifies a subset of questionable exitrons likely arising from reverse transcription artifacts
Schulz, Laura, Torres-Diz, Manuel, Cortés-López, Mariela, Hayer, Katharina E, Asnani, Mukta, Tasian, Sarah K, Barash, Yoseph, Sotillo, Elena, Zarnack, Kathi, König, Julian, Thomas-Tikhonenko, Andrei
Published in Genome Biology (28.06.2021)
Published in Genome Biology (28.06.2021)
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Journal Article
Decoding a cancer-relevant splicing decision in the RON proto-oncogene using high-throughput mutagenesis
Braun, Simon, Enculescu, Mihaela, Setty, Samarth T., Cortés-López, Mariela, de Almeida, Bernardo P., Sutandy, F. X. Reymond, Schulz, Laura, Busch, Anke, Seiler, Markus, Ebersberger, Stefanie, Barbosa-Morais, Nuno L., Legewie, Stefan, König, Julian, Zarnack, Kathi
Published in Nature communications (17.08.2018)
Published in Nature communications (17.08.2018)
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Journal Article
Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB
Coelho, Miguel B, Attig, Jan, Bellora, Nicolás, König, Julian, Hallegger, Martina, Kayikci, Melis, Eyras, Eduardo, Ule, Jernej, Smith, Christopher WJ
Published in The EMBO journal (04.03.2015)
Published in The EMBO journal (04.03.2015)
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Journal Article
How effective are small-scale energy interventions in developing countries? Results from a post-evaluation on project-level
Terrapon-Pfaff, Julia, Dienst, Carmen, König, Julian, Ortiz, Willington
Published in Applied energy (15.12.2014)
Published in Applied energy (15.12.2014)
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Journal Article
Conference Proceeding
Insights into the design and interpretation of iCLIP experiments
Haberman, Nejc, Huppertz, Ina, Attig, Jan, König, Julian, Wang, Zhen, Hauer, Christian, Hentze, Matthias W, Kulozik, Andreas E, Le Hir, Hervé, Curk, Tomaž, Sibley, Christopher R, Zarnack, Kathi, Ule, Jernej
Published in Genome Biology (16.01.2017)
Published in Genome Biology (16.01.2017)
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Journal Article
Intramolecular autoinhibition regulates the selectivity of PRPF40A tandem WW domains for proline-rich motifs
Martínez-Lumbreras, Santiago, Träger, Lena K., Mulorz, Miriam M., Payr, Marco, Dikaya, Varvara, Hipp, Clara, König, Julian, Sattler, Michael
Published in Nature communications (08.05.2024)
Published in Nature communications (08.05.2024)
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Journal Article
Splicing repression allows the gradual emergence of new Alu-exons in primate evolution
Attig, Jan, Ruiz de Los Mozos, Igor, Haberman, Nejc, Wang, Zhen, Emmett, Warren, Zarnack, Kathi, König, Julian, Ule, Jernej
Published in eLife (18.11.2016)
Published in eLife (18.11.2016)
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Journal Article
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
Sugimoto, Yoichiro, König, Julian, Hussain, Shobbir, Zupan, Blaž, Curk, Tomaž, Frye, Michaela, Ule, Jernej
Published in Genome biology (01.01.2012)
Published in Genome biology (01.01.2012)
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Journal Article
High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance
Cortés-López, Mariela, Schulz, Laura, Enculescu, Mihaela, Paret, Claudia, Spiekermann, Bea, Quesnel-Vallières, Mathieu, Torres-Diz, Manuel, Unic, Sebastian, Busch, Anke, Orekhova, Anna, Kuban, Monika, Mesitov, Mikhail, Mulorz, Miriam M., Shraim, Rawan, Kielisch, Fridolin, Faber, Jörg, Barash, Yoseph, Thomas-Tikhonenko, Andrei, Zarnack, Kathi, Legewie, Stefan, König, Julian
Published in Nature communications (22.09.2022)
Published in Nature communications (22.09.2022)
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Journal Article
Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L
Rossbach, Oliver, Hung, Lee-Hsueh, Khrameeva, Ekaterina, Schreiner, Silke, König, Julian, Curk, Tomaž, Zupan, Blaž, Ule, Jernej, Gelfand, Mikhail S, Bindereif, Albrecht
Published in RNA biology (01.02.2014)
Published in RNA biology (01.02.2014)
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Journal Article
K6-linked ubiquitylation marks formaldehyde-induced RNA-protein crosslinks for resolution
Suryo Rahmanto, Aldwin, Blum, Christian J, Scalera, Claudia, Heidelberger, Jan B, Mesitov, Mikhail, Horn-Ghetko, Daniel, Gräf, Justus F, Mikicic, Ivan, Hobrecht, Rebecca, Orekhova, Anna, Ostermaier, Matthias, Ebersberger, Stefanie, Möckel, Martin M, Krapoth, Nils, Da Silva Fernandes, Nádia, Mizi, Athanasia, Zhu, Yajie, Chen, Jia-Xuan, Choudhary, Chunaram, Papantonis, Argyris, Ulrich, Helle D, Schulman, Brenda A, König, Julian, Beli, Petra
Published in Molecular cell (07.12.2023)
Published in Molecular cell (07.12.2023)
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