Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate
Juul, Malene, Bertl, Johanna, Guo, Qianyun, Nielsen, Morten Muhlig, Świtnicki, Michał, Hornshøj, Henrik, Madsen, Tobias, Hobolth, Asger, Pedersen, Jakob Skou
Published in eLife (31.03.2017)
Published in eLife (31.03.2017)
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Journal Article
Mutational Context and Diverse Clonal Development in Early and Late Bladder Cancer
Nordentoft, Iver, Lamy, Philippe, Birkenkamp-Demtröder, Karin, Shumansky, Karey, Vang, Søren, Hornshøj, Henrik, Juul, Malene, Villesen, Palle, Hedegaard, Jakob, Roth, Andrew, Thorsen, Kasper, Høyer, Søren, Borre, Michael, Reinert, Thomas, Fristrup, Niels, Dyrskjøt, Lars, Shah, Sohrab, Pedersen, Jakob Skou, Ørntoft, Torben F.
Published in Cell reports (Cambridge) (12.06.2014)
Published in Cell reports (Cambridge) (12.06.2014)
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Journal Article
The landscape and driver potential of site-specific hotspots across cancer genomes
Juul, Randi Istrup, Nielsen, Morten Muhlig, Juul, Malene, Feuerbach, Lars, Pedersen, Jakob Skou
Published in Npj genomic medicine (13.05.2021)
Published in Npj genomic medicine (13.05.2021)
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Journal Article
A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data
Bertl, Johanna, Guo, Qianyun, Juul, Malene, Besenbacher, Søren, Nielsen, Morten Muhlig, Hornshøj, Henrik, Pedersen, Jakob Skou, Hobolth, Asger
Published in BMC bioinformatics (19.04.2018)
Published in BMC bioinformatics (19.04.2018)
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Journal Article
ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation
Juul, Malene, Madsen, Tobias, Guo, Qianyun, Bertl, Johanna, Hobolth, Asger, Kellis, Manolis, Pedersen, Jakob Skou
Published in Bioinformatics (15.01.2019)
Published in Bioinformatics (15.01.2019)
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Journal Article
EBADIMEX: an empirical Bayes approach to detect joint differential expression and methylation and to classify samples
Madsen, Tobias, Świtnicki, Michał, Juul, Malene, Pedersen, Jakob Skou
Published in Statistical applications in genetics and molecular biology (16.11.2019)
Published in Statistical applications in genetics and molecular biology (16.11.2019)
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Journal Article
Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival
Hornshøj, Henrik, Nielsen, Morten Muhlig, Sinnott-Armstrong, Nicholas A., Świtnicki, Michał P., Juul, Malene, Madsen, Tobias, Sallari, Richard, Kellis, Manolis, Ørntoft, Torben, Hobolth, Asger, Pedersen, Jakob Skou
Published in Npj genomic medicine (11.01.2018)
Published in Npj genomic medicine (11.01.2018)
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Journal Article
The whole-genome panorama of cancer drivers
Radhakrishnan Sabarinathan, Pich, Oriol, Martincorena, Inigo, Rubio-Perez, Carlota, Juul, Malene, Wala, Jeremiah, Schumacher, Steven, Shapira, Ofer, Sidiropoulos, Nikos, Waszak, Sebastian, Tamborero, David, Mularoni, Loris, Rheinbay, Esther, Hornshoj, Henrik, Deu-Pons, Jordi, Muinos, Ferran, Bertl, Johanna, Guo, Qianyun, Creighton, Chad J, Weischenfeldt, Joachim, Korbel, Jan O, Getz, Gad, Campbell, Peter J, Pedersen, Jakob S, Beroukhim, Rameen, Perez-Gonzalez, Abel, Lopez-Bigas, Nuria, Pcawg Drivers And Functional Interpretation Group, Icgc/tcga Pan-Cancer Analysis Of Whole Genomes Net
Published in bioRxiv (23.12.2017)
Published in bioRxiv (23.12.2017)
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A Site Specific Model And Analysis Of The Neutral Somatic Mutation Rate In Whole-Genome Cancer Data
Bertl, Johanna, Guo, Qianyun, Malene Juul Rasmussen, Besenbacher, Soeren, Nielsen, Morten Muhlig, Hornshoej, Henrik, Pedersen, Jakob Skou, Hobolth, Asger
Published in bioRxiv (21.06.2017)
Published in bioRxiv (21.06.2017)
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Paper
Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival
Hornshoj, Henrik, Nielsen, Morten Muhlig, Sinnott-Armstrong, Nicholas A, Micha P witnicki, Malene Juul Rasmussen, Madsen, Tobias, Sallari, Richard, Kellis, Manolis, Orntoft, Torben, Hobolth, Asger, Pedersen, Jakob Skou
Published in bioRxiv (30.08.2017)
Published in bioRxiv (30.08.2017)
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