Democratising deep learning for microscopy with ZeroCostDL4Mic
von Chamier, Lucas, Laine, Romain F, Jukkala, Johanna, Spahn, Christoph, Krentzel, Daniel, Nehme, Elias, Lerche, Martina, Hernández-Pérez, Sara, Mattila, Pieta K, Karinou, Eleni, Holden, Séamus, Solak, Ahmet Can, Krull, Alexander, Buchholz, Tim-Oliver, Jones, Martin L, Royer, Loïc A, Leterrier, Christophe, Shechtman, Yoav, Jug, Florian, Heilemann, Mike, Jacquemet, Guillaume, Henriques, Ricardo
Published in Nature communications (15.04.2021)
Published in Nature communications (15.04.2021)
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Journal Article
Cell segmentation methods for label-free contrast microscopy: review and comprehensive comparison
Vicar, Tomas, Balvan, Jan, Jaros, Josef, Jug, Florian, Kolar, Radim, Masarik, Michal, Gumulec, Jaromir
Published in BMC bioinformatics (28.06.2019)
Published in BMC bioinformatics (28.06.2019)
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Journal Article
Prediction of designer-recombinases for DNA editing with generative deep learning
Schmitt, Lukas Theo, Paszkowski-Rogacz, Maciej, Jug, Florian, Buchholz, Frank
Published in Nature communications (27.12.2022)
Published in Nature communications (27.12.2022)
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Journal Article
Content-aware image restoration: pushing the limits of fluorescence microscopy
Weigert, Martin, Schmidt, Uwe, Boothe, Tobias, Müller, Andreas, Dibrov, Alexandr, Jain, Akanksha, Wilhelm, Benjamin, Schmidt, Deborah, Broaddus, Coleman, Culley, Siân, Rocha-Martins, Mauricio, Segovia-Miranda, Fabián, Norden, Caren, Henriques, Ricardo, Zerial, Marino, Solimena, Michele, Rink, Jochen, Tomancak, Pavel, Royer, Loic, Jug, Florian, Myers, Eugene W
Published in Nature methods (01.12.2018)
Published in Nature methods (01.12.2018)
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Journal Article
CLIJ: GPU-accelerated image processing for everyone
Haase, Robert, Royer, Loic A, Steinbach, Peter, Schmidt, Deborah, Dibrov, Alexandr, Schmidt, Uwe, Weigert, Martin, Maghelli, Nicola, Tomancak, Pavel, Jug, Florian, Myers, Eugene W
Published in Nature methods (01.01.2020)
Published in Nature methods (01.01.2020)
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Journal Article
Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation
Jain, Akanksha, Ulman, Vladimir, Mukherjee, Arghyadip, Prakash, Mangal, Cuenca, Marina B., Pimpale, Lokesh G., Münster, Stefan, Haase, Robert, Panfilio, Kristen A., Jug, Florian, Grill, Stephan W., Tomancak, Pavel, Pavlopoulos, Anastasios
Published in Nature communications (05.11.2020)
Published in Nature communications (05.11.2020)
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Journal Article
An objective comparison of cell-tracking algorithms
Ulman, Vladimír, Maška, Martin, Magnusson, Klas E G, Ronneberger, Olaf, Haubold, Carsten, Harder, Nathalie, Matula, Pavel, Matula, Petr, Svoboda, David, Radojevic, Miroslav, Smal, Ihor, Rohr, Karl, Jaldén, Joakim, Blau, Helen M, Dzyubachyk, Oleh, Lelieveldt, Boudewijn, Xiao, Pengdong, Li, Yuexiang, Cho, Siu-Yeung, Dufour, Alexandre C, Olivo-Marin, Jean-Christophe, Reyes-Aldasoro, Constantino C, Solis-Lemus, Jose A, Bensch, Robert, Brox, Thomas, Stegmaier, Johannes, Mikut, Ralf, Wolf, Steffen, Hamprecht, Fred A, Esteves, Tiago, Quelhas, Pedro, Demirel, Ömer, Malmström, Lars, Jug, Florian, Tomancak, Pavel, Meijering, Erik, Muñoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solorzano, Carlos
Published in Nature methods (01.12.2017)
Published in Nature methods (01.12.2017)
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Journal Article
Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software
Kaiser, Matthias, Jug, Florian, Julou, Thomas, Deshpande, Siddharth, Pfohl, Thomas, Silander, Olin K, Myers, Gene, van Nimwegen, Erik
Published in Nature communications (15.01.2018)
Published in Nature communications (15.01.2018)
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Journal Article
LABKIT: Labeling and Segmentation Toolkit for Big Image Data
Arzt, Matthias, Deschamps, Joran, Schmied, Christopher, Pietzsch, Tobias, Schmidt, Deborah, Tomancak, Pavel, Haase, Robert, Jug, Florian
Published in Frontiers in computer science (Lausanne) (10.02.2022)
Published in Frontiers in computer science (Lausanne) (10.02.2022)
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Journal Article
Probabilistic Noise2Void: Unsupervised Content-Aware Denoising
Krull, Alexander, Vičar, Tomáš, Prakash, Mangal, Lalit, Manan, Jug, Florian
Published in Frontiers in computer science (Lausanne) (19.02.2020)
Published in Frontiers in computer science (Lausanne) (19.02.2020)
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Journal Article
Differential lateral and basal tension drive folding of Drosophila wing discs through two distinct mechanisms
Sui, Liyuan, Alt, Silvanus, Weigert, Martin, Dye, Natalie, Eaton, Suzanne, Jug, Florian, Myers, Eugene W, Jülicher, Frank, Salbreux, Guillaume, Dahmann, Christian
Published in Nature communications (05.11.2018)
Published in Nature communications (05.11.2018)
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Journal Article
Zyxin contributes to coupling between cell junctions and contractile actomyosin networks during apical constriction
Slabodnick, Mark M, Tintori, Sophia C, Prakash, Mangal, Zhang, Pu, Higgins, Christopher D, Chen, Alicia H, Cupp, Timothy D, Wong, Terrence, Bowie, Emily, Jug, Florian, Goldstein, Bob
Published in PLoS genetics (28.03.2023)
Published in PLoS genetics (28.03.2023)
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Journal Article
Editorial: Methods and Tools for Bioimage Analysis
Levet, Florian, Uhlmann, Virginie, Jug, Florian
Published in Frontiers in computer science (Lausanne) (30.05.2022)
Published in Frontiers in computer science (Lausanne) (30.05.2022)
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Journal Article
Bioprinting Soft 3D Models of Hematopoiesis using Natural Silk Fibroin‐Based Bioink Efficiently Supports Platelet Differentiation
Di Buduo, Christian Andrea, Lunghi, Marco, Kuzmenko, Volodymyr, Laurent, Pierre‐Alexandre, Della Rosa, Giulia, Del Fante, Claudia, Dalle Nogare, Damian Edward, Jug, Florian, Perotti, Cesare, Eto, Koji, Pecci, Alessandro, Redwan, Itedale Namro, Balduini, Alessandra
Published in Advanced science (01.05.2024)
Published in Advanced science (01.05.2024)
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Journal Article
Live-cell imaging powered by computation
Shroff, Hari, Testa, Ilaria, Jug, Florian, Manley, Suliana
Published in Nature reviews. Molecular cell biology (01.06.2024)
Published in Nature reviews. Molecular cell biology (01.06.2024)
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Journal Article