A FZD7-specific Antibody-Drug Conjugate Induces Ovarian Tumor Regression in Preclinical Models
Do, Myan, Wu, Christina C N, Sonavane, Pooja R, Juarez, Edwin F, Adams, Stephen R, Ross, Jason, Rodriguez Y Baena, Alessandra, Patel, Charmi, Mesirov, Jill P, Carson, Dennis A, Advani, Sunil J, Willert, Karl
Published in Molecular cancer therapeutics (01.01.2022)
Published in Molecular cancer therapeutics (01.01.2022)
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High-throughput microscopy reveals the impact of multifactorial environmental perturbations on colorectal cancer cell growth
Chiang, Chun-Te, Lau, Roy, Ghaffarizadeh, Ahmadreza, Brovold, Matthew, Vyas, Dipen, Juárez, Edwin F, Atala, Anthony, Agus, David B, Soker, Shay, Macklin, Paul, Ruderman, Daniel, Mumenthaler, Shannon M
Published in Gigascience (19.04.2021)
Published in Gigascience (19.04.2021)
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Model-based assessment of mammalian cell metabolic functionalities using omics data
Richelle, Anne, Kellman, Benjamin P., Wenzel, Alexander T., Chiang, Austin W.T., Reagan, Tyler, Gutierrez, Jahir M., Joshi, Chintan, Li, Shangzhong, Liu, Joanne K., Masson, Helen, Lee, Jooyong, Li, Zerong, Heirendt, Laurent, Trefois, Christophe, Juarez, Edwin F., Bath, Tyler, Borland, David, Mesirov, Jill P., Robasky, Kimberly, Lewis, Nathan E.
Published in Cell reports methods (26.07.2021)
Published in Cell reports methods (26.07.2021)
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An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data [version 2; peer review: 2 approved]
Mah, Clarence K, Wenzel, Alexander T, Juarez, Edwin F, Tabor, Thorin, Reich, Michael M, Mesirov, Jill P
Published in F1000 research (2019)
Published in F1000 research (2019)
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Inhibition of dual-specificity tyrosine phosphorylation-regulated kinase 2 perturbs 26S proteasome-addicted neoplastic progression
Banerjee, Sourav, Wei, Tiantian, Wang, Jue, Lee, Jenna J., Gutierrez, Haydee L., Chapma, Owen, Wiley, Sandra E., Mayfield, Joshua E., Tandon, Vasudha, Juarez, Edwin F., Chavez, Lukas, Liang, Ruqi, Sah, Robert L., Costello, Caitlin, Mesirov, Jill P., de la Vega, Laureano, Cooper, Kimberly L., Dixon, Jack E., Xiao, Junyu, Lei, Xiaoguang
Published in Proceedings of the National Academy of Sciences - PNAS (03.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (03.12.2019)
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Functional Precision Medicine Identifies New Therapeutic Candidates for Medulloblastoma
Rusert, Jessica M, Juarez, Edwin F, Brabetz, Sebastian, Jensen, James, Garancher, Alexandra, Chau, Lianne Q, Tacheva-Grigorova, Silvia K, Wahab, Sameerah, Udaka, Yoko T, Finlay, Darren, Seker-Cin, Huriye, Reardon, Brendan, Gröbner, Susanne, Serrano, Jonathan, Ecker, Jonas, Qi, Lin, Kogiso, Mari, Du, Yuchen, Baxter, Patricia A, Henderson, Jacob J, Berens, Michael E, Vuori, Kristiina, Milde, Till, Cho, Yoon-Jae, Li, Xiao-Nan, Olson, James M, Reyes, Iris, Snuderl, Matija, Wong, Terence C, Dimmock, David P, Nahas, Shareef A, Malicki, Denise, Crawford, John R, Levy, Michael L, Van Allen, Eliezer M, Pfister, Stefan M, Tamayo, Pablo, Kool, Marcel, Mesirov, Jill P, Wechsler-Reya, Robert J
Published in Cancer research (Chicago, Ill.) (01.12.2020)
Published in Cancer research (Chicago, Ill.) (01.12.2020)
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3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma
Okonechnikov, Konstantin, Camgöz, Aylin, Chapman, Owen, Wani, Sameena, Park, Donglim Esther, Hübner, Jens-Martin, Chakraborty, Abhijit, Pagadala, Meghana, Bump, Rosalind, Chandran, Sahaana, Kraft, Katerina, Acuna-Hidalgo, Rocio, Reid, Derek, Sikkink, Kristin, Mauermann, Monika, Juarez, Edwin F, Jenseit, Anne, Robinson, James T, Pajtler, Kristian W, Milde, Till, Jäger, Natalie, Fiesel, Petra, Morgan, Ling, Sridhar, Sunita, Coufal, Nicole G, Levy, Michael, Malicki, Denise, Hobbs, Charlotte, Kingsmore, Stephen, Nahas, Shareef, Snuderl, Matija, Crawford, John, Wechsler-Reya, Robert J, Davidson, Tom Belle, Cotter, Jennifer, Michaiel, George, Fleischhack, Gudrun, Mundlos, Stefan, Schmitt, Anthony, Carter, Hannah, Michealraj, Kulandaimanuvel Antony, Kumar, Sachin A, Taylor, Michael D, Rich, Jeremy, Buchholz, Frank, Mesirov, Jill P, Pfister, Stefan M, Ay, Ferhat, Dixon, Jesse R, Kool, Marcel, Chavez, Lukas
Published in Nature communications (21.04.2023)
Published in Nature communications (21.04.2023)
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Quantifying differences in cell line population dynamics using CellPD
Juarez, Edwin F, Lau, Roy, Friedman, Samuel H, Ghaffarizadeh, Ahmadreza, Jonckheere, Edmond, Agus, David B, Mumenthaler, Shannon M, Macklin, Paul
Published in BMC systems biology (21.09.2016)
Published in BMC systems biology (21.09.2016)
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Quantification of cancer cell migration with an integrated experimental-computational pipeline [version 1; peer review: 2 approved with reservations]
Juarez, Edwin F, Garri, Carolina, Ghaffarizadeh, Ahmadreza, Macklin, Paul, Kani, Kian
Published in F1000 research (2018)
Published in F1000 research (2018)
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Progress Towards Computational 3-D Multicellular Systems Biology
Macklin, Paul, Frieboes, Hermann B, Sparks, Jessica L, Ghaffarizadeh, Ahmadreza, Friedman, Samuel H, Juarez, Edwin F, Jonckheere, Edmond, Mumenthaler, Shannon M
Published in Advances in experimental medicine and biology (01.01.2016)
Published in Advances in experimental medicine and biology (01.01.2016)
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TRLS-13. MULTI-OMICS AND FUNCTIONAL PRECISION MEDICINE FOR NEWLY DIAGNOSED AND RECURRENT PEDIATRIC CENTRAL NERVOUS SYSTEM TUMORS
Crawford, John R, Lo, Yan Yuen, Pagadala, Meghana S, Chapman, Owen S, Sridhar, Sunita, Juarez, Edwin F, Tzaridis, Theophilos, Chau, Lianne Q, Wang, Jun, Eisemann, Tanja, Masihi, Meher Beigi, Chambers, Kendall R, Dixit, Deobrat, Koubourli, Daphne, Larson, Jon D, Guidugli, Lucia, Hammer, Monia, Wong, Terence, Abdullaev, Zied, Quezado, Martha, Martins, Timothy J, Reich, Michael, Sears, Timothy, Hobbs, Charlotte, Kingsmore, Stephen F, Levy, Michael L, Gonda, David, Malicki, Denise M, Snuderl, Matija, Becker, Pamela S, Tamayo, Pablo, Elster, Jennifer D, Aldape, Kenneth, Carter, Hannah, Paul, Megan R, Mesirov, Jill P, Chavez, Lukas, Wechsler-Reya, Robert J
Published in Neuro-oncology (Charlottesville, Va.) (18.06.2024)
Published in Neuro-oncology (Charlottesville, Va.) (18.06.2024)
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EPEN-18. Oncogenic 3D genome conformations identify novel therapeutic targets in ependymoma
Okonechnikov, Konstantin, Camgöz, Aylin, Park, Donglim Esther, Chapman, Owen, Hübner, Jens-Martin, Jenseit, Anne, Chakraborty, Abhijit, Pagadala, Meghana, Bump, Rosalind, Chandran, Sahaana, Kraft, Katherina, Hidalgo, Rocio Acuna, Reid, Derek, Juarez, Edwin F, Robinson, James T, Pajtler, Kristian W, Milde, Till, Coufal, Nicole, Levy, Michael, Malicki, Denise, Nahas, Shareef, Snuderl, Matija, Crawford, John, Wechsler-Reya, Robert, Mundlos, Stefan, Schmitt, Anthony, Carter, Hannah, Michealraj, Kulandaimanuvel Antony, Kumar, Sachin A, Taylor, Michael D, Rich, Jeremy, Mesirov, Jill, Pfister, Stefan P, Ay, Ferhat, Dixon, Jesse, Kool, Marcel, Chavez, Lukas
Published in Neuro-oncology (Charlottesville, Va.) (03.06.2022)
Published in Neuro-oncology (Charlottesville, Va.) (03.06.2022)
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EPEN-04. ONCOGENIC 3D TUMOR GENOME ORGANIZATION IDENTIFIES NEW THERAPEUTIC TARGETS IN EPENDYMOMA
Okonechnikov, Konstantin, Hübner, Jens-Martin, Chapman, Owen, Chakraborty, Abhijit, Pagadala, Meghana, Bump, Rosalind, Chandran, Sahaana, Kraft, Katerina, Hidalgo, Rocio Acuna, Mundlos, Stefan, Wechsler-Reya, Robert, Juarez, Edwin F, Coufal, Nicole, Levy, Michael, Crawford, John, Pajtler, Kristian, Reid, Derek, Schmitt, Anthony, Carter, Hannah, Ay, Ferhat, Dixon, Jesse, Mesirov, Jill, Pfister, Stefan M, Kool, Marcel, Chavez, Lukas
Published in Neuro-oncology (Charlottesville, Va.) (04.12.2020)
Published in Neuro-oncology (Charlottesville, Va.) (04.12.2020)
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Journal Article
MultiCellDS: a standard and a community for sharing multicellular data
Friedman, Samuel H, Alexander Ra Anderson, Bortz, David M, Fletcher, Alexander G, Frieboes, Hermann B, Ghaffarizadeh, Ahmadreza, Grimes, David Robert, Hawkins-Daarud, Andrea, Hoehme, Stefan, Juarez, Edwin F, Kesselman, Carl, Merks, Roeland Mh, Mumenthaler, Shannon M, Newton, Paul K, Norton, Kerri-Ann, Rawat, Rishi, Rockne, Russell C, Ruderman, Daniel, Jacob, Scott, Sindi, Suzanne S, Sparks, Jessica L, Swanson, Kristin, Agus, David B, Macklin, Paul
Published in bioRxiv (09.12.2016)
Published in bioRxiv (09.12.2016)
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MultiCellDS: a community-developed standard for curating microenvironment-dependent multicellular data
Friedman, Samuel H, Alexander Ra Anderson, Bortz, David M, Fletcher, Alexander G, Frieboes, Hermann B, Ghaffarizadeh, Ahmadreza, Grimes, David Robert, Hawkins-Daarud, Andrea, Hoehme, Stefan, Juarez, Edwin F, Kesselman, Carl, Merks, Roeland Mh, Mumenthaler, Shannon M, Newton, Paul K, Norton, Kerri-Ann, Rawat, Rishi, Rockne, Russell C, Ruderman, Daniel, Jacob, Scott, Sindi, Suzanne S, Sparks, Jessica L, Swanson, Kristin, Agus, David B, Macklin, Paul
Published in bioRxiv (08.12.2016)
Published in bioRxiv (08.12.2016)
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