Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity
Tian, Renmao, Ning, Daliang, He, Zhili, Zhang, Ping, Spencer, Sarah J, Gao, Shuhong, Shi, Weiling, Wu, Linwei, Zhang, Ya, Yang, Yunfeng, Adams, Benjamin G, Rocha, Andrea M, Detienne, Brittny L, Lowe, Kenneth A, Joyner, Dominique C, Klingeman, Dawn M, Arkin, Adam P, Fields, Matthew W, Hazen, Terry C, Stahl, David A, Alm, Eric J, Zhou, Jizhong
Published in Microbiome (06.04.2020)
Published in Microbiome (06.04.2020)
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Journal Article
The unique chemistry of Eastern Mediterranean water masses selects for distinct microbial communities by depth
Techtmann, Stephen M, Fortney, Julian L, Ayers, Kati A, Joyner, Dominique C, Linley, Thomas D, Pfiffner, Susan M, Hazen, Terry C
Published in PloS one (25.03.2015)
Published in PloS one (25.03.2015)
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Journal Article
Evaluating various composite sampling modes for detecting pathogenic SARS-CoV-2 virus in raw sewage
Li, Ye, Ash, Kurt T, Joyner, Dominique C, Williams, Daniel E, Alamilla, Isabella, McKay, Peter J, Iler, Chris, Hazen, Terry C
Published in Frontiers in microbiology (23.11.2023)
Published in Frontiers in microbiology (23.11.2023)
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Journal Article
Microbial community composition and diversity in Caspian Sea sediments
Mahmoudi, Nagissa, Robeson, Michael S., Castro, Hector F., Fortney, Julian L., Techtmann, Stephen M., Joyner, Dominique C., Paradis, Charles J., Pfiffner, Susan M., Hazen, Terry C.
Published in FEMS microbiology ecology (01.01.2015)
Published in FEMS microbiology ecology (01.01.2015)
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Journal Article
Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation
Brodie, Eoin L, DeSantis, Todd Z, Joyner, Dominique C, Baek, Seung M, Larsen, Joern T, Andersen, Gary L, Hazen, Terry C, Richardson, Paul M, Herman, Donald J, Tokunaga, Tetsu K, Wan, Jiamin M, Firestone, Mary K
Published in Applied and Environmental Microbiology (01.09.2006)
Published in Applied and Environmental Microbiology (01.09.2006)
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Journal Article
Decay of enveloped SARS-CoV-2 and non-enveloped PMMoV RNA in raw sewage from university dormitories
Li, Ye, Ash, K T, Joyner, Dominique C, Williams, Daniel E, Alamilla, I, McKay, P J, Iler, C, Green, B M, Kara-Murdoch, F, Swift, C M, Hazen, Terry C
Published in Frontiers in microbiology (28.04.2023)
Published in Frontiers in microbiology (28.04.2023)
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Journal Article
Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes
Kothari, Ankita, Wu, Yu-Wei, Chandonia, John-Marc, Charrier, Marimikel, Rajeev, Lara, Rocha, Andrea M, Joyner, Dominique C, Hazen, Terry C, Singer, Steven W, Mukhopadhyay, Aindrila
Published in mBio (26.02.2019)
Published in mBio (26.02.2019)
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Journal Article
Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater
Brodie, Eoin L., Joyner, Dominique C., Faybishenko, Boris, Conrad, Mark E., Rios-Velazquez, Carlos, Malave, Josue, Martinez, Ramon, Mork, Benjamin, Willett, Anna, Koenigsberg, Steven, Herman, Donald J., Firestone, Mary K., Hazen, Terry C.
Published in Chemosphere (Oxford) (01.10.2011)
Published in Chemosphere (Oxford) (01.10.2011)
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Journal Article
Salt Stress in Desulfovibrio vulgaris Hildenborough: an Integrated Genomics Approach
MUKHOPADHYAY, Aindrila, ZHILI HE, HUANG, Katherine, HUANG, Rick, JOYNER, Dominique C, KATZ, Natalie, KELLER, Martin, OELLER, Paul, REDDING, Alyssa, JUN SUN, WALL, Judy, JING WEI, ALM, Eric J, ZAMIN YANG, YEN, Huei-Che, JIZHONG ZHOU, KEASLING, Jay D, ARKIN, Adam P, BAIDOO, Edward E, BORGLIN, Sharon C, WENQIONG CHEN, HAZEN, Terry C, QIANG HE, HOLMAN, Hoi-Ying
Published in Journal of Bacteriology (01.06.2006)
Published in Journal of Bacteriology (01.06.2006)
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Journal Article
Cell-Wide Responses to Low-Oxygen Exposure in Desulfovibrio vulgaris Hildenborough
Mukhopadhyay, Aindrila, Redding, Alyssa M, Joachimiak, Marcin P, Arkin, Adam P, Borglin, Sharon E, Dehal, Paramvir S, Chakraborty, Romy, Geller, Jil T, Hazen, Terry C, He, Qiang, Joyner, Dominique C, Martin, Vincent J J, Wall, Judy D, Yang, Zamin Koo, Zhou, Jizhong, Keasling, Jay D
Published in Journal of Bacteriology (01.08.2007)
Published in Journal of Bacteriology (01.08.2007)
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Journal Article
Colwellia psychrerythraea Strains from Distant Deep Sea Basins Show Adaptation to Local Conditions
Techtmann, Stephen M, Fitzgerald, Kathleen S, Stelling, Savannah C, Joyner, Dominique C, Uttukar, Sagar M, Harris, Austin P, Alshibli, Noor K, Brown, Steven D, Hazen, Terry C
Published in Frontiers in environmental science (09.05.2016)
Published in Frontiers in environmental science (09.05.2016)
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Journal Article
Response of Desulfovibrio vulgaris to Alkaline Stress
STOLYAR, Sergey, QIANG HE, JIZHONG ZHOU, WALL, Judy D, ARKIN, Adam P, STAHL, David A, JOACHIMIAK, Marcin P, ZHILI HE, ZAMIN KOO YANG, BORGLIN, Sharon E, JOYNER, Dominique C, HUANG, Katherine, ALM, Eric, HAZEN, Terry C
Published in Journal of Bacteriology (01.12.2007)
Published in Journal of Bacteriology (01.12.2007)
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Journal Article
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
Mason, Olivia U, Scott, Nicole M, Gonzalez, Antonio, Robbins-Pianka, Adam, Bælum, Jacob, Kimbrel, Jeffrey, Bouskill, Nicholas J, Prestat, Emmanuel, Borglin, Sharon, Joyner, Dominique C, Fortney, Julian L, Jurelevicius, Diogo, Stringfellow, William T, Alvarez-Cohen, Lisa, Hazen, Terry C, Knight, Rob, Gilbert, Jack A, Jansson, Janet K
Published in The ISME Journal (01.07.2014)
Published in The ISME Journal (01.07.2014)
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Journal Article
Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria
Hazen, Terry C., Dubinsky, Eric A., DeSantis, Todd Z., Andersen, Gary L., Piceno, Yvette M., Singh, Navjeet, Jansson, Janet K., Probst, Alexander, Borglin, Sharon E., Fortney, Julian L., Stringfellow, William T., Bill, Markus, Conrad, Mark E., Tom, Lauren M., Chavarria, Krystle L., Alusi, Thana R., Lamendella, Regina, Joyner, Dominique C., Spier, Chelsea, Baelum, Jacob, Auer, Manfred, Zemla, Mardn L., Chakraborty, Romy, Sonnenthal, Eric L., D'haeseleer, Patrik, Holman, Hoi-Ying N., Osman, Shariff, Lu, Zhenmei, Van Nostrand, Joy D., Deng, Ye, Zhou, Jizhong, Mason, Olivia U.
Published in Science (American Association for the Advancement of Science) (08.10.2010)
Published in Science (American Association for the Advancement of Science) (08.10.2010)
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Journal Article
Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone
Wu, Xiaoqin, Gushgari-Doyle, Sara, Lui, Lauren M, Hendrickson, Andrew J, Liu, Yina, Jagadamma, Sindhu, Nielsen, Torben N, Justice, Nicholas B, Simmons, Tuesday, Hess, Nancy J, Joyner, Dominique C, Hazen, Terry C, Arkin, Adam P, Chakraborty, Romy
Published in Applied and environmental microbiology (28.06.2023)
Published in Applied and environmental microbiology (28.06.2023)
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Journal Article
Natural bacterial communities serve as quantitative geochemical biosensors
Smith, Mark B, Rocha, Andrea M, Smillie, Chris S, Olesen, Scott W, Paradis, Charles, Wu, Liyou, Campbell, James H, Fortney, Julian L, Mehlhorn, Tonia L, Lowe, Kenneth A, Earles, Jennifer E, Phillips, Jana, Techtmann, Steve M, Joyner, Dominique C, Elias, Dwayne A, Bailey, Kathryn L, Hurt, Jr, Richard A, Preheim, Sarah P, Sanders, Matthew C, Yang, Joy, Mueller, Marcella A, Brooks, Scott, Watson, David B, Zhang, Ping, He, Zhili, Dubinsky, Eric A, Adams, Paul D, Arkin, Adam P, Fields, Matthew W, Zhou, Jizhong, Alm, Eric J, Hazen, Terry C
Published in mBio (12.05.2015)
Published in mBio (12.05.2015)
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Journal Article
Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer
Moon, Ji-Won, Paradis, Charles J., Joyner, Dominique C., von Netzer, Frederick, Majumder, Erica L., Dixon, Emma R., Podar, Mircea, Ge, Xiaoxuan, Walian, Peter J., Smith, Heidi J., Wu, Xiaoqin, Zane, Grant M., Walker, Kathleen F., Thorgersen, Michael P., Poole II, Farris L., Lui, Lauren M., Adams, Benjamin G., De León, Kara B., Brewer, Sheridan S., Williams, Daniel E., Lowe, Kenneth A., Rodriguez, Miguel, Mehlhorn, Tonia L., Pfiffner, Susan M., Chakraborty, Romy, Arkin, Adam P., Wall, Judy D., Fields, Matthew W., Adams, Michael W.W., Stahl, David A., Elias, Dwayne A., Hazen, Terry C.
Published in Chemosphere (Oxford) (01.09.2020)
Published in Chemosphere (Oxford) (01.09.2020)
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Journal Article
Comparing the response of the indigenous microbial community to crude oil amendment in oxic versus hypoxic conditions
Griffiths, Z. G., Putt, Andrew D., Miller, J. I., Campa, Maria Fernanda, Joyner, Dominique C., Pelz, O., Garajayeva, Nargiz, Ceccopieri, M., Gardinali, P., Hazen, Terry C.
Published in Frontiers in microbiomes (14.12.2023)
Published in Frontiers in microbiomes (14.12.2023)
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Journal Article
Impact of elevated nitrate on sulfate-reducing bacteria: a comparative Study of Desulfovibrio vulgaris
He, Qiang, He, Zhili, Joyner, Dominique C, Joachimiak, Marcin, Price, Morgan N, Yang, Zamin K, Yen, Huei-Che Bill, Hemme, Christopher L, Chen, Wenqiong, Fields, Matthew M, Stahl, David A, Keasling, Jay D, Keller, Martin, Arkin, Adam P, Hazen, Terry C, Wall, Judy D, Zhou, Jizhong
Published in The ISME Journal (01.11.2010)
Published in The ISME Journal (01.11.2010)
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Journal Article