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The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability
Diehl, Alexander D., Meehan, Terrence F., Bradford, Yvonne M., Brush, Matthew H., Dahdul, Wasila M., Dougall, David S., He, Yongqun, Osumi-Sutherland, David, Ruttenberg, Alan, Sarntivijai, Sirarat, Van Slyke, Ceri E., Vasilevsky, Nicole A., Haendel, Melissa A., Blake, Judith A., Mungall, Christopher J.
Published in Journal of biomedical semantics (04.07.2016)
Published in Journal of biomedical semantics (04.07.2016)
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The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation
Buttigieg, Pier Luigi, Pafilis, Evangelos, Lewis, Suzanna E., Schildhauer, Mark P., Walls, Ramona L., Mungall, Christopher J.
Published in Journal of biomedical semantics (23.09.2016)
Published in Journal of biomedical semantics (23.09.2016)
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The environment ontology: contextualising biological and biomedical entities
Buttigieg, Pier, Morrison, Norman, Smith, Barry, Mungall, Christopher J, Lewis, Suzanna E
Published in Journal of biomedical semantics (11.12.2013)
Published in Journal of biomedical semantics (11.12.2013)
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The Infectious Disease Ontology in the age of COVID-19
Babcock, Shane, Beverley, John, Cowell, Lindsay G., Smith, Barry
Published in Journal of biomedical semantics (18.07.2021)
Published in Journal of biomedical semantics (18.07.2021)
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The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
Dumontier, Michel, Baker, Christopher JO, Baran, Joachim, Callahan, Alison, Chepelev, Leonid, Cruz-Toledo, José, Del Rio, Nicholas R, Duck, Geraint, Furlong, Laura I, Keath, Nichealla, Klassen, Dana, McCusker, Jamie P, Queralt-Rosinach, Núria, Samwald, Matthias, Villanueva-Rosales, Natalia, Wilkinson, Mark D, Hoehndorf, Robert
Published in Journal of biomedical semantics (06.03.2014)
Published in Journal of biomedical semantics (06.03.2014)
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Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic
Queralt-Rosinach, Núria, Kaliyaperumal, Rajaram, Bernabé, César H., Long, Qinqin, Joosten, Simone A., van der Wijk, Henk Jan, Flikkenschild, Erik L.A., Burger, Kees, Jacobsen, Annika, Mons, Barend, Roos, Marco
Published in Journal of biomedical semantics (25.04.2022)
Published in Journal of biomedical semantics (25.04.2022)
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Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models
Li, Jianfu, Li, Yiming, Pan, Yuanyi, Guo, Jinjing, Sun, Zenan, Li, Fang, He, Yongqun, Tao, Cui
Published in Journal of biomedical semantics (10.08.2024)
Published in Journal of biomedical semantics (10.08.2024)
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Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies
Kersloot, Martijn G., van Putten, Florentien J. P., Abu-Hanna, Ameen, Cornet, Ronald, Arts, Derk L.
Published in Journal of biomedical semantics (16.11.2020)
Published in Journal of biomedical semantics (16.11.2020)
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A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology
He, Yongqun, Yu, Hong, Huffman, Anthony, Lin, Asiyah Yu, Natale, Darren A., Beverley, John, Zheng, Ling, Perl, Yehoshua, Wang, Zhigang, Liu, Yingtong, Ong, Edison, Wang, Yang, Huang, Philip, Tran, Long, Du, Jinyang, Shah, Zalan, Shah, Easheta, Desai, Roshan, Huang, Hsin-hui, Tian, Yujia, Merrell, Eric, Duncan, William D., Arabandi, Sivaram, Schriml, Lynn M., Zheng, Jie, Masci, Anna Maria, Wang, Liwei, Liu, Hongfang, Smaili, Fatima Zohra, Hoehndorf, Robert, Pendlington, Zoë May, Roncaglia, Paola, Ye, Xianwei, Xie, Jiangan, Tang, Yi-Wei, Yang, Xiaolin, Peng, Suyuan, Zhang, Luxia, Chen, Luonan, Hur, Junguk, Omenn, Gilbert S., Athey, Brian, Smith, Barry
Published in Journal of biomedical semantics (21.10.2022)
Published in Journal of biomedical semantics (21.10.2022)
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DMTO: a realistic ontology for standard diabetes mellitus treatment
El-Sappagh, Shaker, Kwak, Daehan, Ali, Farman, Kwak, Kyung-Sup
Published in Journal of biomedical semantics (06.02.2018)
Published in Journal of biomedical semantics (06.02.2018)
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Moonstone: a novel natural language processing system for inferring social risk from clinical narratives
Conway, Mike, Keyhani, Salomeh, Christensen, Lee, South, Brett R., Vali, Marzieh, Walter, Louise C., Mowery, Danielle L., Abdelrahman, Samir, Chapman, Wendy W.
Published in Journal of biomedical semantics (11.04.2019)
Published in Journal of biomedical semantics (11.04.2019)
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Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)
Toro, Sabrina, Anagnostopoulos, Anna V., Bello, Susan M., Blumberg, Kai, Cameron, Rhiannon, Carmody, Leigh, Diehl, Alexander D., Dooley, Damion M., Duncan, William D., Fey, Petra, Gaudet, Pascale, Harris, Nomi L., Joachimiak, Marcin P., Kiani, Leila, Lubiana, Tiago, Munoz-Torres, Monica C., O‘Neil, Shawn, Osumi-Sutherland, David, Puig-Barbe, Aleix, Reese, Justin T., Reiser, Leonore, Robb, Sofia MC, Ruemping, Troy, Seager, James, Sid, Eric, Stefancsik, Ray, Weber, Magalie, Wood, Valerie, Haendel, Melissa A., Mungall, Christopher J.
Published in Journal of biomedical semantics (17.10.2024)
Published in Journal of biomedical semantics (17.10.2024)
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Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets
Du, Jingcheng, Xu, Jun, Song, Hsingyi, Liu, Xiangyu, Tao, Cui
Published in Journal of biomedical semantics (03.03.2017)
Published in Journal of biomedical semantics (03.03.2017)
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Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
Haendel, Melissa A, Balhoff, James P, Bastian, Frederic B, Blackburn, David C, Blake, Judith A, Bradford, Yvonne, Comte, Aurelie, Dahdul, Wasila M, Dececchi, Thomas A, Druzinsky, Robert E, Hayamizu, Terry F, Ibrahim, Nizar, Lewis, Suzanna E, Mabee, Paula M, Niknejad, Anne, Robinson-Rechavi, Marc, Sereno, Paul C, Mungall, Christopher J
Published in Journal of biomedical semantics (19.05.2014)
Published in Journal of biomedical semantics (19.05.2014)
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