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Standardizing free-text data exemplified by two fields from the Immune Epitope Database
Duesing, Sebastian, Bennett, Jason, Overton, James A., Vita, Randi, Peters, Bjoern
Published in Journal of biomedical semantics (22.03.2025)
Published in Journal of biomedical semantics (22.03.2025)
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Digital evolution: Novo Nordisk’s shift to ontology-based data management
Tan, Shawn Zheng Kai, Baksi, Shounak, Bjerregaard, Thomas Gade, Elangovan, Preethi, Gopalakrishnan, Thrishna Kuttikattu, Hric, Darko, Joumaa, Joffrey, Li, Beidi, Rabbani, Kashif, Venkatesan, Santhosh Kannan, Valdez, Joshua Daniel, Kuriakose, Saritha Vettikunnel
Published in Journal of biomedical semantics (22.03.2025)
Published in Journal of biomedical semantics (22.03.2025)
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New and revised gene ontology biological process terms describe multiorganism interactions critical for understanding microbial pathogenesis and sequences of concern
Godbold, Gene, Proescher, Jody, Gaudet, Pascale
Published in Journal of biomedical semantics (21.03.2025)
Published in Journal of biomedical semantics (21.03.2025)
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Ontoserver: a syndicated terminology server
Metke-Jimenez, Alejandro, Steel, Jim, Hansen, David, Lawley, Michael
Published in Journal of biomedical semantics (17.09.2018)
Published in Journal of biomedical semantics (17.09.2018)
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Semantic units: organizing knowledge graphs into semantically meaningful units of representation
Vogt, Lars, Kuhn, Tobias, Hoehndorf, Robert
Published in Journal of biomedical semantics (27.05.2024)
Published in Journal of biomedical semantics (27.05.2024)
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Drug target ontology to classify and integrate drug discovery data
Lin, Yu, Mehta, Saurabh, Küçük-McGinty, Hande, Turner, John Paul, Vidovic, Dusica, Forlin, Michele, Koleti, Amar, Nguyen, Dac-Trung, Jensen, Lars Juhl, Guha, Rajarshi, Mathias, Stephen L., Ursu, Oleg, Stathias, Vasileios, Duan, Jianbin, Nabizadeh, Nooshin, Chung, Caty, Mader, Christopher, Visser, Ubbo, Yang, Jeremy J., Bologa, Cristian G., Oprea, Tudor I., Schürer, Stephan C.
Published in Journal of biomedical semantics (09.11.2017)
Published in Journal of biomedical semantics (09.11.2017)
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Matching biomedical ontologies based on formal concept analysis
Zhao, Mengyi, Zhang, Songmao, Li, Weizhuo, Chen, Guowei
Published in Journal of biomedical semantics (19.03.2018)
Published in Journal of biomedical semantics (19.03.2018)
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Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis
Zheng, Jie, Li, Xingxian, Masci, Anna Maria, Kahn, Hayleigh, Huffman, Anthony, Asfaw, Eliyas, Pan, Yuanyi, Guo, Jinjing, He, Virginia, Song, Justin, Seleznev, Andrey I., Lin, Asiyah Yu, He, Yongqun
Published in Journal of biomedical semantics (19.06.2024)
Published in Journal of biomedical semantics (19.06.2024)
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12 years on – Is the NLM medical text indexer still useful and relevant?
Mork, James, Aronson, Alan, Demner-Fushman, Dina
Published in Journal of biomedical semantics (23.02.2017)
Published in Journal of biomedical semantics (23.02.2017)
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Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features
Ikeda, Shuya, Aoki-Kinoshita, Kiyoko F., Chiba, Hirokazu, Goto, Susumu, Hosoda, Masae, Kawashima, Shuichi, Kim, Jin-Dong, Moriya, Yuki, Ohta, Tazro, Ono, Hiromasa, Takatsuki, Terue, Yamamoto, Yasunori, Katayama, Toshiaki
Published in Journal of biomedical semantics (08.01.2025)
Published in Journal of biomedical semantics (08.01.2025)
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MeSH2Matrix: combining MeSH keywords and machine learning for biomedical relation classification based on PubMed
Turki, Houcemeddine, Dossou, Bonaventure F. P., Emezue, Chris Chinenye, Owodunni, Abraham Toluwase, Hadj Taieb, Mohamed Ali, Ben Aouicha, Mohamed, Ben Hassen, Hanen, Masmoudi, Afif
Published in Journal of biomedical semantics (02.10.2024)
Published in Journal of biomedical semantics (02.10.2024)
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Modeling biomedical experimental processes with OBI
Brinkman, Ryan R, Courtot, Mélanie, Derom, Dirk, Fostel, Jennifer M, He, Yongqun, Lord, Phillip, Malone, James, Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Soldatova, Larisa N, Stoeckert, Christian J, Turner, Jessica A, Zheng, Jie
Published in Journal of biomedical semantics (22.06.2010)
Published in Journal of biomedical semantics (22.06.2010)
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BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs
Daza, Daniel, Alivanistos, Dimitrios, Mitra, Payal, Pijnenburg, Thom, Cochez, Michael, Groth, Paul
Published in Journal of biomedical semantics (08.12.2023)
Published in Journal of biomedical semantics (08.12.2023)
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Dead simple OWL design patterns
Osumi-Sutherland, David, Courtot, Melanie, Balhoff, James P., Mungall, Christopher
Published in Journal of biomedical semantics (05.06.2017)
Published in Journal of biomedical semantics (05.06.2017)
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