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AmberTools
Case, David A., Aktulga, Hasan Metin, Belfon, Kellon, Cerutti, David S., Cisneros, G. Andrés, Cruzeiro, Vinícius Wilian D., Forouzesh, Negin, Giese, Timothy J., Götz, Andreas W., Gohlke, Holger, Izadi, Saeed, Kasavajhala, Koushik, Kaymak, Mehmet C., King, Edward, Kurtzman, Tom, Lee, Tai-Sung, Li, Pengfei, Liu, Jian, Luchko, Tyler, Luo, Ray, Manathunga, Madushanka, Machado, Matias R., Nguyen, Hai Minh, O’Hearn, Kurt A., Onufriev, Alexey V., Pan, Feng, Pantano, Sergio, Qi, Ruxi, Rahnamoun, Ali, Risheh, Ali, Schott-Verdugo, Stephan, Shajan, Akhil, Swails, Jason, Wang, Junmei, Wei, Haixin, Wu, Xiongwu, Wu, Yongxian, Zhang, Shi, Zhao, Shiji, Zhu, Qiang, Cheatham, Thomas E., Roe, Daniel R., Roitberg, Adrian, Simmerling, Carlos, York, Darrin M., Nagan, Maria C., Merz, Kenneth M.
Published in Journal of chemical information and modeling (23.10.2023)
Published in Journal of chemical information and modeling (23.10.2023)
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Omicron Variant (B.1.1.529): Infectivity, Vaccine Breakthrough, and Antibody Resistance
Chen, Jiahui, Wang, Rui, Gilby, Nancy Benovich, Wei, Guo-Wei
Published in Journal of chemical information and modeling (24.01.2022)
Published in Journal of chemical information and modeling (24.01.2022)
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ZINC20A Free Ultralarge-Scale Chemical Database for Ligand Discovery
Irwin, John J, Tang, Khanh G, Young, Jennifer, Dandarchuluun, Chinzorig, Wong, Benjamin R, Khurelbaatar, Munkhzul, Moroz, Yurii S, Mayfield, John, Sayle, Roger A
Published in Journal of chemical information and modeling (28.12.2020)
Published in Journal of chemical information and modeling (28.12.2020)
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MolGPT: Molecular Generation Using a Transformer-Decoder Model
Bagal, Viraj, Aggarwal, Rishal, Vinod, P. K., Priyakumar, U. Deva
Published in Journal of chemical information and modeling (09.05.2022)
Published in Journal of chemical information and modeling (09.05.2022)
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Analyzing Learned Molecular Representations for Property Prediction
Yang, Kevin, Swanson, Kyle, Jin, Wengong, Coley, Connor, Eiden, Philipp, Gao, Hua, Guzman-Perez, Angel, Hopper, Timothy, Kelley, Brian, Mathea, Miriam, Palmer, Andrew, Settels, Volker, Jaakkola, Tommi, Jensen, Klavs, Barzilay, Regina
Published in Journal of chemical information and modeling (26.08.2019)
Published in Journal of chemical information and modeling (26.08.2019)
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GuacaMol: Benchmarking Models for de Novo Molecular Design
Brown, Nathan, Fiscato, Marco, Segler, Marwin H.S, Vaucher, Alain C
Published in Journal of chemical information and modeling (25.03.2019)
Published in Journal of chemical information and modeling (25.03.2019)
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Chemprop: A Machine Learning Package for Chemical Property Prediction
Heid, Esther, Greenman, Kevin P., Chung, Yunsie, Li, Shih-Cheng, Graff, David E., Vermeire, Florence H., Wu, Haoyang, Green, William H., McGill, Charles J.
Published in Journal of chemical information and modeling (08.01.2024)
Published in Journal of chemical information and modeling (08.01.2024)
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Comparative Assessment of Scoring Functions: The CASF-2016 Update
Su, Minyi, Yang, Qifan, Du, Yu, Feng, Guoqin, Liu, Zhihai, Li, Yan, Wang, Renxiao
Published in Journal of chemical information and modeling (25.02.2019)
Published in Journal of chemical information and modeling (25.02.2019)
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Alchemical Binding Free Energy Calculations in AMBER20: Advances and Best Practices for Drug Discovery
Lee, Tai-Sung, Allen, Bryce K, Giese, Timothy J, Guo, Zhenyu, Li, Pengfei, Lin, Charles, McGee, T. Dwight, Pearlman, David A, Radak, Brian K, Tao, Yujun, Tsai, Hsu-Chun, Xu, Huafeng, Sherman, Woody, York, Darrin M
Published in Journal of chemical information and modeling (23.11.2020)
Published in Journal of chemical information and modeling (23.11.2020)
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Deep Learning in Chemistry
Mater, Adam C, Coote, Michelle L
Published in Journal of chemical information and modeling (24.06.2019)
Published in Journal of chemical information and modeling (24.06.2019)
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Autodock Vina Adopts More Accurate Binding Poses but Autodock4 Forms Better Binding Affinity
Nguyen, Nguyen Thanh, Nguyen, Trung Hai, Pham, T. Ngoc Han, Huy, Nguyen Truong, Bay, Mai Van, Pham, Minh Quan, Nam, Pham Cam, Vu, Van V, Ngo, Son Tung
Published in Journal of chemical information and modeling (27.01.2020)
Published in Journal of chemical information and modeling (27.01.2020)
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Predicting Drug–Target Interaction Using a Novel Graph Neural Network with 3D Structure-Embedded Graph Representation
Lim, Jaechang, Ryu, Seongok, Park, Kyubyong, Choe, Yo Joong, Ham, Jiyeon, Kim, Woo Youn
Published in Journal of chemical information and modeling (23.09.2019)
Published in Journal of chemical information and modeling (23.09.2019)
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Mol2vec: Unsupervised Machine Learning Approach with Chemical Intuition
Jaeger, Sabrina, Fulle, Simone, Turk, Samo
Published in Journal of chemical information and modeling (22.01.2018)
Published in Journal of chemical information and modeling (22.01.2018)
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ZINC 15 – Ligand Discovery for Everyone
Sterling, Teague, Irwin, John J
Published in Journal of chemical information and modeling (23.11.2015)
Published in Journal of chemical information and modeling (23.11.2015)
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