CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer
Lever, Jake, Zhao, Eric Y., Grewal, Jasleen, Jones, Martin R., Jones, Steven J. M.
Published in Nature methods (01.06.2019)
Published in Nature methods (01.06.2019)
Get full text
Journal Article
ORegAnno 3.0: a community-driven resource for curated regulatory annotation
Lesurf, Robert, Cotto, Kelsy C, Wang, Grace, Griffith, Malachi, Kasaian, Katayoon, Jones, Steven J M, Montgomery, Stephen B, Griffith, Obi L
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
Get full text
Journal Article
Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase
Akbari, Vahid, Garant, Jean-Michel, O'Neill, Kieran, Pandoh, Pawan, Moore, Richard, Marra, Marco A, Hirst, Martin, Jones, Steven J M
Published in Genome Biology (22.02.2021)
Published in Genome Biology (22.02.2021)
Get full text
Journal Article
Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
Gardy, Jennifer L, Johnston, James C, Sui, Shannan J. Ho, Cook, Victoria J, Shah, Lena, Brodkin, Elizabeth, Rempel, Shirley, Moore, Richard, Zhao, Yongjun, Holt, Robert, Varhol, Richard, Birol, Inanc, Lem, Marcus, Sharma, Meenu K, Elwood, Kevin, Jones, Steven J.M, Brinkman, Fiona S.L, Brunham, Robert C, Tang, Patrick
Published in The New England journal of medicine (24.02.2011)
Published in The New England journal of medicine (24.02.2011)
Get full text
Journal Article
Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay
Roach, Michael J, Johnson, Daniel L, Bohlmann, Joerg, van Vuuren, Hennie J J, Jones, Steven J M, Pretorius, Isak S, Schmidt, Simon A, Borneman, Anthony R
Published in PLoS genetics (20.11.2018)
Published in PLoS genetics (20.11.2018)
Get full text
Journal Article
Aberrant patterns of H3K4 and H3K27 histone lysine methylation occur across subgroups in medulloblastoma
Dubuc, Adrian M., Remke, Marc, Korshunov, Andrey, Northcott, Paul A., Zhan, Shing H., Mendez-Lago, Maria, Kool, Marcel, Jones, David T. W., Unterberger, Alexander, Morrissy, A. Sorana, Shih, David, Peacock, John, Ramaswamy, Vijay, Rolider, Adi, Wang, Xin, Witt, Hendrik, Hielscher, Thomas, Hawkins, Cynthia, Vibhakar, Rajeev, Croul, Sidney, Rutka, James T., Weiss, William A., Jones, Steven J. M., Eberhart, Charles G., Marra, Marco A., Pfister, Stefan M., Taylor, Michael D.
Published in Acta neuropathologica (01.03.2013)
Published in Acta neuropathologica (01.03.2013)
Get full text
Journal Article
Assembling millions of short DNA sequences using SSAKE
Warren, René L., Sutton, Granger G., Jones, Steven J. M., Holt, Robert A.
Published in Bioinformatics (15.02.2007)
Published in Bioinformatics (15.02.2007)
Get full text
Journal Article
Web Resource
Conserved role of intragenic DNA methylation in regulating alternative promoters
Maunakea, Alika K., Nagarajan, Raman P., Bilenky, Mikhail, Ballinger, Tracy J., D’Souza, Cletus, Fouse, Shaun D., Johnson, Brett E., Hong, Chibo, Nielsen, Cydney, Zhao, Yongjun, Turecki, Gustavo, Delaney, Allen, Varhol, Richard, Thiessen, Nina, Shchors, Ksenya, Heine, Vivi M., Rowitch, David H., Xing, Xiaoyun, Fiore, Chris, Schillebeeckx, Maximiliaan, Jones, Steven J. M., Haussler, David, Marra, Marco A., Hirst, Martin, Wang, Ting, Costello, Joseph F.
Published in Nature (London) (08.07.2010)
Published in Nature (London) (08.07.2010)
Get full text
Journal Article
Insights into Conifer Giga-Genomes
De La Torre, Amanda R., Birol, Inanc, Bousquet, Jean, Ingvarsson, Pär K., Jansson, Stefan, Jones, Steven J.M., Keeling, Christopher I., MacKay, John, Nilsson, Ove, Ritland, Kermit, Street, Nathaniel, Yanchuk, Alvin, Zerbe, Philipp, Bohlmann, Jörg
Published in Plant physiology (Bethesda) (01.12.2014)
Published in Plant physiology (Bethesda) (01.12.2014)
Get full text
Journal Article
Hive plots—rational approach to visualizing networks
KRZYWINSKI, Martin, BIROL, Inanc, JONES, Steven J. M, MARRA, Marco A
Published in Briefings in bioinformatics (01.09.2012)
Published in Briefings in bioinformatics (01.09.2012)
Get full text
Journal Article
De novo transcriptome assembly with ABySS
Birol, Inanç, Jackman, Shaun D., Nielsen, Cydney B., Qian, Jenny Q., Varhol, Richard, Stazyk, Greg, Morin, Ryan D., Zhao, Yongjun, Hirst, Martin, Schein, Jacqueline E., Horsman, Doug E., Connors, Joseph M., Gascoyne, Randy D., Marra, Marco A., Jones, Steven J. M.
Published in Bioinformatics (01.11.2009)
Published in Bioinformatics (01.11.2009)
Get full text
Journal Article
Conference Proceeding
Mutations in EZH2 Cause Weaver Syndrome
Gibson, William T., Hood, Rebecca L., Zhan, Shing Hei, Bulman, Dennis E., Fejes, Anthony P., Moore, Richard, Mungall, Andrew J., Eydoux, Patrice, Babul-Hirji, Riyana, An, Jianghong, Marra, Marco A., Chitayat, David, Boycott, Kym M., Weaver, David D., Jones, Steven J.M.
Published in American journal of human genetics (13.01.2012)
Published in American journal of human genetics (13.01.2012)
Get full text
Journal Article
Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images
Farahani, Hossein, Boschman, Jeffrey, Farnell, David, Darbandsari, Amirali, Zhang, Allen, Ahmadvand, Pouya, Jones, Steven J.M., Huntsman, David, Köbel, Martin, Gilks, C. Blake, Singh, Naveena, Bashashati, Ali
Published in Modern pathology (01.12.2022)
Published in Modern pathology (01.12.2022)
Get full text
Journal Article
Clonal expansion and epigenetic reprogramming following deletion or amplification of mutant IDH1
Mazor, Tali, Chesnelong, Charles, Pankov, Aleksandr, Jalbert, Llewellyn E., Hong, Chibo, Hayes, Josie, Smirnov, Ivan V., Marshall, Roxanne, Souza, Camila F., Shen, Yaoqing, Viswanath, Pavithra, Noushmehr, Houtan, Ronen, Sabrina M., Jones, Steven J. M., Marra, Marco A., Cairncross, J. Gregory, Perry, Arie, Nelson, Sarah J., Chang, Susan M., Bollen, Andrew W., Molinaro, Annette M., Bengtsson, Henrik, Olshen, Adam B., Weiss, Samuel, Phillips, Joanna J., Luchman, H. Artee, Costello, Joseph F.
Published in Proceedings of the National Academy of Sciences - PNAS (03.10.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (03.10.2017)
Get full text
Journal Article
Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution
Chan-Seng-Yue, Michelle, Kim, Jaeseung C., Wilson, Gavin W., Ng, Karen, Figueroa, Eugenia Flores, O’Kane, Grainne M., Connor, Ashton A., Denroche, Robert E., Grant, Robert C., McLeod, Jessica, Wilson, Julie M., Jang, Gun Ho, Zhang, Amy, Dodd, Anna, Liang, Sheng-Ben, Borgida, Ayelet, Chadwick, Dianne, Kalimuthu, Sangeetha, Lungu, Ilinca, Bartlett, John M. S., Krzyzanowski, Paul M., Sandhu, Vandana, Tiriac, Hervé, Froeling, Fieke E. M., Karasinska, Joanna M., Topham, James T., Renouf, Daniel J., Schaeffer, David F., Jones, Steven J. M., Marra, Marco A., Laskin, Janessa, Chetty, Runjan, Stein, Lincoln D., Zogopoulos, George, Haibe-Kains, Benjamin, Campbell, Peter J., Tuveson, David A., Knox, Jennifer J., Fischer, Sandra E., Gallinger, Steven, Notta, Faiyaz
Published in Nature genetics (01.02.2020)
Published in Nature genetics (01.02.2020)
Get full text
Journal Article
AI-based histopathology image analysis reveals a distinct subset of endometrial cancers
Darbandsari, Amirali, Farahani, Hossein, Asadi, Maryam, Wiens, Matthew, Cochrane, Dawn, Khajegili Mirabadi, Ali, Jamieson, Amy, Farnell, David, Ahmadvand, Pouya, Douglas, Maxwell, Leung, Samuel, Abolmaesumi, Purang, Jones, Steven J. M., Talhouk, Aline, Kommoss, Stefan, Gilks, C. Blake, Huntsman, David G., Singh, Naveena, McAlpine, Jessica N., Bashashati, Ali
Published in Nature communications (26.06.2024)
Published in Nature communications (26.06.2024)
Get full text
Journal Article
Sequencing the genome of the Atlantic salmon (Salmo salar)
Davidson, William S, Koop, Ben F, Jones, Steven J M, Iturra, Patricia, Vidal, Rodrigo, Maass, Alejandro, Jonassen, Inge, Lien, Sigbjorn, Omholt, Stig W
Published in Genome biology (30.09.2010)
Published in Genome biology (30.09.2010)
Get full text
Journal Article