Democratising deep learning for microscopy with ZeroCostDL4Mic
von Chamier, Lucas, Laine, Romain F., Jukkala, Johanna, Spahn, Christoph, Krentzel, Daniel, Nehme, Elias, Lerche, Martina, Hernández-Pérez, Sara, Mattila, Pieta K., Karinou, Eleni, Holden, Séamus, Solak, Ahmet Can, Krull, Alexander, Buchholz, Tim-Oliver, Jones, Martin L., Royer, Loïc A., Leterrier, Christophe, Shechtman, Yoav, Jug, Florian, Heilemann, Mike, Jacquemet, Guillaume, Henriques, Ricardo
Published in Nature communications (15.04.2021)
Published in Nature communications (15.04.2021)
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Journal Article
Dynamic endothelial cell rearrangements drive developmental vessel regression
Franco, Claudio A, Jones, Martin L, Bernabeu, Miguel O, Geudens, Ilse, Mathivet, Thomas, Rosa, Andre, Lopes, Felicia M, Lima, Aida P, Ragab, Anan, Collins, Russell T, Phng, Li-Kun, Coveney, Peter V, Gerhardt, Holger
Published in PLoS biology (01.04.2015)
Published in PLoS biology (01.04.2015)
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Journal Article
Semantic segmentation of HeLa cells: An objective comparison between one traditional algorithm and four deep-learning architectures
Karabag, Cefa, Jones, Martin L, Peddie, Christopher J, Weston, Anne E, Collinson, Lucy M, Reyes-Aldasoro, Constantino Carlos
Published in PloS one (02.10.2020)
Published in PloS one (02.10.2020)
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Journal Article
Synchronization of endothelial Dll4-Notch dynamics switch blood vessels from branching to expansion
Ubezio, Benedetta, Blanco, Raquel Agudo, Geudens, Ilse, Stanchi, Fabio, Mathivet, Thomas, Jones, Martin L, Ragab, Anan, Bentley, Katie, Gerhardt, Holger
Published in eLife (13.04.2016)
Published in eLife (13.04.2016)
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Journal Article
3D correlative light and electron microscopy of cultured cells using serial blockface scanning electron microscopy
Russell, Matthew R G, Lerner, Thomas R, Burden, Jemima J, Nkwe, David O, Pelchen-Matthews, Annegret, Domart, Marie-Charlotte, Durgan, Joanne, Weston, Anne, Jones, Martin L, Peddie, Christopher J, Carzaniga, Raffaella, Florey, Oliver, Marsh, Mark, Gutierrez, Maximiliano G, Collinson, Lucy M
Published in Journal of cell science (01.01.2017)
Published in Journal of cell science (01.01.2017)
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Journal Article
Non-canonical Wnt signalling modulates the endothelial shear stress flow sensor in vascular remodelling
Franco, Claudio A, Jones, Martin L, Bernabeu, Miguel O, Vion, Anne-Clemence, Barbacena, Pedro, Fan, Jieqing, Mathivet, Thomas, Fonseca, Catarina G, Ragab, Anan, Yamaguchi, Terry P, Coveney, Peter V, Lang, Richard A, Gerhardt, Holger
Published in eLife (04.02.2016)
Published in eLife (04.02.2016)
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Journal Article
Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis
Bernabeu, Miguel O., Jones, Martin L., Nielsen, Jens H., Krüger, Timm, Nash, Rupert W., Groen, Derek, Schmieschek, Sebastian, Hetherington, James, Gerhardt, Holger, Franco, Claudio A., Coveney, Peter V.
Published in Journal of the Royal Society interface (06.10.2014)
Published in Journal of the Royal Society interface (06.10.2014)
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Journal Article
Crosshair, semi-automated targeting for electron microscopy with a motorised ultramicrotome
Meechan, Kimberly, Guan, Wei, Riedinger, Alfons, Stankova, Vera, Yoshimura, Azumi, Pipitone, Rosa, Milberger, Arthur, Schaar, Helmuth, Romero-Brey, Inés, Templin, Rachel, Peddie, Christopher J, Schieber, Nicole L, Jones, Martin L, Collinson, Lucy, Schwab, Yannick
Published in eLife (15.11.2022)
Published in eLife (15.11.2022)
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Journal Article
Correction: dynamic endothelial cell rearrangements drive developmental vessel regression
Franco, Claudio A, Jones, Martin L, Bernabeu, Miguel O, Geudens, Ilse, Mathivet, Thomas, Rosa, Andre, Lopes, Felicia M, Lima, Aida P, Ragab, Anan, Collins, Russell T, Phng, Li-Kun, Coveney, Peter V, Gerhardt, Holger
Published in PLoS biology (14.05.2015)
Published in PLoS biology (14.05.2015)
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Journal Article
Volumetric Semantic Instance Segmentation of the Plasma Membrane of HeLa Cells
Karabağ, Cefa, Jones, Martin L, Reyes-Aldasoro, Constantino Carlos
Published in Journal of imaging (01.06.2021)
Published in Journal of imaging (01.06.2021)
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Journal Article
Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy
Karabağ, Cefa, Jones, Martin L., Peddie, Christopher J., Weston, Anne E., Collinson, Lucy M., Reyes-Aldasoro, Constantino Carlos
Published in Journal of imaging (12.09.2019)
Published in Journal of imaging (12.09.2019)
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Journal Article
Urinary biomarker, dermal, and air measurement results for 2,4-D and chlorpyrifos farm applicators in the Agricultural Health Study
Thomas, Kent W, Dosemeci, Mustafa, Hoppin, Jane A, Sheldon, Linda S, Croghan, Carry W, Gordon, Sydney M, Jones, Martin L, Reynolds, Stephen J, Raymer, James H, Akland, Gerald G, Lynch, Charles F, Knott, Charles E, Sandler, Dale P, Blair, Aaron E, Alavanja, Michael C
Published in Journal of exposure science & environmental epidemiology (01.03.2010)
Published in Journal of exposure science & environmental epidemiology (01.03.2010)
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Journal Article
Mycobacterium tuberculosis replicates within necrotic human macrophages
Lerner, Thomas R, Borel, Sophie, Greenwood, Daniel J, Repnik, Urska, Russell, Matthew R G, Herbst, Susanne, Jones, Martin L, Collinson, Lucy M, Griffiths, Gareth, Gutierrez, Maximiliano G
Published in The Journal of cell biology (06.03.2017)
Published in The Journal of cell biology (06.03.2017)
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Journal Article
Deep learning for automatic segmentation of the nuclear envelope in electron microscopy data, trained with volunteer segmentations
Spiers, Helen, Songhurst, Harry, Nightingale, Luke, Folter, Joost, Hutchings, Roger, Peddie, Christopher J., Weston, Anne, Strange, Amy, Hindmarsh, Steve, Lintott, Chris, Collinson, Lucy M., Jones, Martin L.
Published in Traffic (Copenhagen, Denmark) (01.07.2021)
Published in Traffic (Copenhagen, Denmark) (01.07.2021)
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Journal Article
Current Progress and Challenges in Large-Scale 3D Mitochondria Instance Segmentation
Franco-Barranco, Daniel, Lin, Zudi, Jang, Won-Dong, Wang, Xueying, Shen, Qijia, Yin, Wenjie, Fan, Yutian, Li, Mingxing, Chen, Chang, Xiong, Zhiwei, Xin, Rui, Liu, Hao, Chen, Huai, Li, Zhili, Zhao, Jie, Chen, Xuejin, Pape, Constantin, Conrad, Ryan, Nightingale, Luke, de Folter, Joost, Jones, Martin L., Liu, Yanling, Ziaei, Dorsa, Huschauer, Stephan, Arganda-Carreras, Ignacio, Pfister, Hanspeter, Wei, Donglai
Published in IEEE transactions on medical imaging (01.12.2023)
Published in IEEE transactions on medical imaging (01.12.2023)
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