A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes
Bratcher, Holly B, Corton, Craig, Jolley, Keith A, Parkhill, Julian, Maiden, Martin C J
Published in BMC genomics (18.12.2014)
Published in BMC genomics (18.12.2014)
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A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter
Méric, Guillaume, Yahara, Koji, Mageiros, Leonardos, Pascoe, Ben, Maiden, Martin C J, Jolley, Keith A, Sheppard, Samuel K
Published in PloS one (27.03.2014)
Published in PloS one (27.03.2014)
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A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies
Bridel, Sébastien, Bouchez, Valérie, Brancotte, Bryan, Hauck, Sofia, Armatys, Nathalie, Landier, Annie, Mühle, Estelle, Guillot, Sophie, Toubiana, Julie, Maiden, Martin C. J., Jolley, Keith A., Brisse, Sylvain
Published in Nature communications (01.07.2022)
Published in Nature communications (01.07.2022)
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Journal Article
Hospital effluent: A reservoir for carbapenemase-producing Enterobacterales?
Cahill, Niamh, O'Connor, Louise, Mahon, Bláthnaid, Varley, Áine, McGrath, Elaine, Ryan, Phelim, Cormican, Martin, Brehony, Carina, Jolley, Keith A., Maiden, Martin C., Brisse, Sylvain, Morris, Dearbháile
Published in The Science of the total environment (01.07.2019)
Published in The Science of the total environment (01.07.2019)
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A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains
Hennart, Melanie, Guglielmini, Julien, Bridel, Sébastien, Maiden, Martin C J, Jolley, Keith A., Criscuolo, Alexis, Brisse, Sylvain
Published in Molecular biology and evolution (02.07.2022)
Published in Molecular biology and evolution (02.07.2022)
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Journal Article
Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes
Gaiarsa, Stefano, Batisti Biffignandi, Gherard, Esposito, Eliana Pia, Castelli, Michele, Jolley, Keith A, Brisse, Sylvain, Sassera, Davide, Zarrilli, Raffaele
Published in Frontiers in microbiology (03.05.2019)
Published in Frontiers in microbiology (03.05.2019)
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Journal Article
Genome-wide association study identifies vitamin B₅ biosynthesis as a host specificity factor in Campylobacter
Sheppard, Samuel K., Didelot, Xavier, Meric, Guillaume, Torralbo, Alicia, Jolley, Keith A., Kelly, David J., Bentley, Stephen D., Maiden, Martin C. J., Parkhill, Julian, Falush, Daniel
Published in Proceedings of the National Academy of Sciences - PNAS (16.07.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (16.07.2013)
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Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis
Méric, Guillaume, Mageiros, Leonardos, Pensar, Johan, Laabei, Maisem, Yahara, Koji, Pascoe, Ben, Kittiwan, Nattinee, Tadee, Phacharaporn, Post, Virginia, Lamble, Sarah, Bowden, Rory, Bray, James E, Morgenstern, Mario, Jolley, Keith A, Maiden, Martin C J, Feil, Edward J, Didelot, Xavier, Miragaia, Maria, de Lencastre, Herminia, Moriarty, T Fintan, Rohde, Holger, Massey, Ruth, Mack, Dietrich, Corander, Jukka, Sheppard, Samuel K
Published in Nature communications (28.11.2018)
Published in Nature communications (28.11.2018)
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Genome evolution and the emergence of pathogenicity in avian Escherichia coli
Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C, Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K, Yahara, Koji, Murray, Susan, Wilkinson, Thomas S, Williams, Lisa K, Hitchings, Matthew D, Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J, Jolley, Keith A, Williams, Nicola J, Corander, Jukka, Sheppard, Samuel K
Published in Nature communications (03.02.2021)
Published in Nature communications (03.02.2021)
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Journal Article
Neisseria gonorrhoeae Population Genomics: Use of the Gonococcal Core Genome to Improve Surveillance of Antimicrobial Resistance
Harrison, Odile B, Cehovin, Ana, Skett, Jessica, Jolley, Keith A, Massari, Paola, Genco, Caroline Attardo, Tang, Christoph M, Maiden, Martin C J
Published in The Journal of infectious diseases (01.12.2020)
Published in The Journal of infectious diseases (01.12.2020)
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Journal Article
Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates
Cody, Alison J, Bray, James E, Jolley, Keith A, McCarthy, Noel D, Maiden, Martin C J
Published in Journal of clinical microbiology (01.07.2017)
Published in Journal of clinical microbiology (01.07.2017)
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Journal Article
Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial
van Tonder, Andries J, Thornton, Mark J, Conlan, Andrew J K, Jolley, Keith A, Goolding, Lee, Mitchell, Andrew P, Dale, James, Palkopoulou, Eleftheria, Hogarth, Philip J, Hewinson, R Glyn, Wood, James L N, Parkhill, Julian
Published in PLoS pathogens (01.11.2021)
Published in PLoS pathogens (01.11.2021)
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Journal Article
Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain
Jolley, Keith A, Bliss, Carly M, Bennett, Julia S, Bratcher, Holly B, Brehony, Carina, Colles, Frances M, Wimalarathna, Helen, Harrison, Odile B, Sheppard, Samuel K, Cody, Alison J, Maiden, Martin C J
Published in Microbiology (Society for General Microbiology) (01.04.2012)
Published in Microbiology (Society for General Microbiology) (01.04.2012)
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