A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter
Méric, Guillaume, Yahara, Koji, Mageiros, Leonardos, Pascoe, Ben, Maiden, Martin C J, Jolley, Keith A, Sheppard, Samuel K
Published in PloS one (27.03.2014)
Published in PloS one (27.03.2014)
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Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial
van Tonder, Andries J, Thornton, Mark J, Conlan, Andrew J K, Jolley, Keith A, Goolding, Lee, Mitchell, Andrew P, Dale, James, Palkopoulou, Eleftheria, Hogarth, Philip J, Hewinson, R Glyn, Wood, James L N, Parkhill, Julian
Published in PLoS pathogens (01.11.2021)
Published in PLoS pathogens (01.11.2021)
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Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes
Gaiarsa, Stefano, Batisti Biffignandi, Gherard, Esposito, Eliana Pia, Castelli, Michele, Jolley, Keith A, Brisse, Sylvain, Sassera, Davide, Zarrilli, Raffaele
Published in Frontiers in microbiology (03.05.2019)
Published in Frontiers in microbiology (03.05.2019)
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Genome-wide association study identifies vitamin B₅ biosynthesis as a host specificity factor in Campylobacter
Sheppard, Samuel K., Didelot, Xavier, Meric, Guillaume, Torralbo, Alicia, Jolley, Keith A., Kelly, David J., Bentley, Stephen D., Maiden, Martin C. J., Parkhill, Julian, Falush, Daniel
Published in Proceedings of the National Academy of Sciences - PNAS (16.07.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (16.07.2013)
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Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis
Méric, Guillaume, Mageiros, Leonardos, Pensar, Johan, Laabei, Maisem, Yahara, Koji, Pascoe, Ben, Kittiwan, Nattinee, Tadee, Phacharaporn, Post, Virginia, Lamble, Sarah, Bowden, Rory, Bray, James E., Morgenstern, Mario, Jolley, Keith A., Maiden, Martin C. J., Feil, Edward J., Didelot, Xavier, Miragaia, Maria, de Lencastre, Herminia, Moriarty, T. Fintan, Rohde, Holger, Massey, Ruth, Mack, Dietrich, Corander, Jukka, Sheppard, Samuel K.
Published in Nature communications (28.11.2018)
Published in Nature communications (28.11.2018)
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Genome evolution and the emergence of pathogenicity in avian Escherichia coli
Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C., Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K., Yahara, Koji, Murray, Susan, Wilkinson, Thomas S., Williams, Lisa K., Hitchings, Matthew D., Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J., Jolley, Keith A., Williams, Nicola J., Corander, Jukka, Sheppard, Samuel K.
Published in Nature communications (03.02.2021)
Published in Nature communications (03.02.2021)
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Journal Article
Neisseria gonorrhoeae Population Genomics: Use of the Gonococcal Core Genome to Improve Surveillance of Antimicrobial Resistance
Harrison, Odile B, Cehovin, Ana, Skett, Jessica, Jolley, Keith A, Massari, Paola, Genco, Caroline Attardo, Tang, Christoph M, Maiden, Martin C J
Published in The Journal of infectious diseases (01.12.2020)
Published in The Journal of infectious diseases (01.12.2020)
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Genomic resolution of an aggressive, widespread, diverse and expanding meningococcal serogroup B, C and W lineage
Lucidarme, Jay, Hill, Dorothea M.C, Bratcher, Holly B, Gray, Steve J, du Plessis, Mignon, Tsang, Raymond S.W, Vazquez, Julio A, Taha, Muhamed-Kheir, Ceyhan, Mehmet, Efron, Adriana M, Gorla, Maria C, Findlow, Jamie, Jolley, Keith A, Maiden, Martin C.J, Borrow, Ray
Published in The Journal of infection (01.11.2015)
Published in The Journal of infection (01.11.2015)
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Description and nomenclature of Neisseria meningitidis capsule locus
Harrison, Odile B, Claus, Heike, Jiang, Ying, Bennett, Julia S, Bratcher, Holly B, Jolley, Keith A, Corton, Craig, Care, Rory, Poolman, Jan T, Zollinger, Wendell D, Frasch, Carl E, Stephens, David S, Feavers, Ian, Frosch, Matthias, Parkhill, Julian, Vogel, Ulrich, Quail, Michael A, Bentley, Stephen D, Maiden, Martin C J
Published in Emerging infectious diseases (01.04.2013)
Published in Emerging infectious diseases (01.04.2013)
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Phylogenomics of Acinetobacter species and analysis of antimicrobial resistance genes
Migliaccio, Antonella, Bray, James, Intoccia, Michele, Stabile, Maria, Scala, Giovanni, Jolley, Keith A., Brisse, Sylvain, Zarrilli, Raffaele
Published in Frontiers in microbiology (19.10.2023)
Published in Frontiers in microbiology (19.10.2023)
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A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies
Bridel, Sébastien, Bouchez, Valérie, Brancotte, Bryan, Hauck, Sofia, Armatys, Nathalie, Landier, Annie, Mühle, Estelle, Guillot, Sophie, Toubiana, Julie, Maiden, Martin C. J., Jolley, Keith A., Brisse, Sylvain
Published in Nature communications (01.07.2022)
Published in Nature communications (01.07.2022)
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High diversity of invasive Haemophilus influenzae isolates in France and the emergence of resistance to third generation cephalosporins by alteration of ftsI gene
Deghmane, Ala-Eddine, Hong, Eva, Chehboub, Sara, Terrade, Aude, Falguières, Michaël, Sort, Morgan, Harrison, Odile, Jolley, Keith A., Taha, Muhamed-Kheir
Published in The Journal of infection (01.07.2019)
Published in The Journal of infection (01.07.2019)
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A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria
BENNETT, Julia S, JOLLEY, Keith A, EARLE, Sarah G, CORTON, Craig, BENTLEY, Stephen D, PARKHILL, Julian, MAIDEN, Martin C. J
Published in Microbiology (Society for General Microbiology) (01.06.2012)
Published in Microbiology (Society for General Microbiology) (01.06.2012)
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Multilocus Sequence Typing of Clostridium difficile
Griffiths, David, Fawley, Warren, Kachrimanidou, Melina, Bowden, Rory, Crook, Derrick W, Fung, Rowena, Golubchik, Tanya, Harding, Rosalind M, Jeffery, Katie J.M, Jolley, Keith A, Kirton, Richard, Peto, Tim E, Rees, Gareth, Stoesser, Nicole, Vaughan, Alison, Walker, A. Sarah, Young, Bernadette C, Wilcox, Mark, Dingle, Kate E
Published in Journal of Clinical Microbiology (01.03.2010)
Published in Journal of Clinical Microbiology (01.03.2010)
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Multilocus Sequence Typing System for the Endosymbiont Wolbachia pipientis
Baldo, Laura, Dunning Hotopp, Julie C, Jolley, Keith A, Bordenstein, Seth R, Biber, Sarah A, Choudhury, Rhitoban Ray, Hayashi, Cheryl, Maiden, Martin C.J, Tettelin, Hervè, Werren, John H
Published in Applied and Environmental Microbiology (01.11.2006)
Published in Applied and Environmental Microbiology (01.11.2006)
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Real-Time Genomic Epidemiological Evaluation of Human Campylobacter Isolates by Use of Whole-Genome Multilocus Sequence Typing
Cody, Alison J, McCarthy, Noel D, Jansen van Rensburg, Melissa, Isinkaye, Tomide, Bentley, Stephen D, Parkhill, Julian, Dingle, Kate E, Bowler, Ian C J W, Jolley, Keith A, Maiden, Martin C J
Published in Journal of Clinical Microbiology (01.08.2013)
Published in Journal of Clinical Microbiology (01.08.2013)
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Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus
Lin, Gu-Lung, Drysdale, Simon B., Snape, Matthew D., O’Connor, Daniel, Brown, Anthony, MacIntyre-Cockett, George, Mellado-Gomez, Esther, de Cesare, Mariateresa, Ansari, M. Azim, Bonsall, David, Bray, James E., Jolley, Keith A., Bowden, Rory, Aerssens, Jeroen, Bont, Louis, Openshaw, Peter J. M., Martinon-Torres, Federico, Nair, Harish, Golubchik, Tanya, Pollard, Andrew J.
Published in Nature communications (16.03.2024)
Published in Nature communications (16.03.2024)
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