Diverse and abundant antibiotic resistance genes in Chinese swine farms
Zhu, Yong-Guan, Johnson, Timothy A., Su, Jian-Qiang, Qiao, Min, Guo, Guang-Xia, Stedtfeld, Robert D., Hashsham, Syed A., Tiedje, James M.
Published in Proceedings of the National Academy of Sciences - PNAS (26.02.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (26.02.2013)
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Journal Article
High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant
Karkman, Antti, Johnson, Timothy A., Lyra, Christina, Stedtfeld, Robert D., Tamminen, Manu, Tiedje, James M., Virta, Marko
Published in FEMS microbiology ecology (01.03.2016)
Published in FEMS microbiology ecology (01.03.2016)
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Journal Article
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments
Muziasari, Windi I., Pärnänen, Katariina, Johnson, Timothy A., Lyra, Christina, Karkman, Antti, Stedtfeld, Robert D., Tamminen, Manu, Tiedje, James M., Virta, Marko
Published in FEMS microbiology ecology (01.04.2016)
Published in FEMS microbiology ecology (01.04.2016)
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Journal Article
In-feed antibiotic effects on the swine intestinal microbiome
Looft, Torey, Johnson, Timothy A., Allen, Heather K., Bayles, Darrell O., Alt, David P., Stedtfeld, Robert D., Sul, Woo Jun, Stedtfeld, Tiffany M., Chai, Benli, Cole, James R., Hashsham, Syed A., Tiedje, James M., Stanton, Thad B.
Published in Proceedings of the National Academy of Sciences - PNAS (31.01.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (31.01.2012)
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Journal Article
Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture
Johnson, Timothy A, Stedtfeld, Robert D, Wang, Qiong, Cole, James R, Hashsham, Syed A, Looft, Torey, Zhu, Yong-Guan, Tiedje, James M
Published in mBio (12.04.2016)
Published in mBio (12.04.2016)
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Journal Article
Dietary Fiber Hierarchical Specificity: the Missing Link for Predictable and Strong Shifts in Gut Bacterial Communities
Cantu-Jungles, Thaisa M, Bulut, Nuseybe, Chambry, Eponine, Ruthes, Andrea, Iacomini, Marcello, Keshavarzian, Ali, Johnson, Timothy A, Hamaker, Bruce R
Published in mBio (29.06.2021)
Published in mBio (29.06.2021)
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Journal Article
Effects of early-life cecal microbiota transplantation from divergently selected inbred chicken lines on growth, gut serotonin, and immune parameters in recipient chickens
Fu, Yuechi, Hu, Jiaying, Erasmus, Marisa A., Johnson, Timothy A., Cheng, Heng-wei
Published in Poultry science (01.07.2022)
Published in Poultry science (01.07.2022)
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Journal Article
Meta-analysis reveals the predictable dynamic development of the gut microbiota in commercial pigs
Dong, Wenxuan, Ricker, Nicole, Holman, Devin B, Johnson, Timothy A
Published in Microbiology spectrum (12.12.2023)
Published in Microbiology spectrum (12.12.2023)
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Journal Article
Synthesis of (−)-PNU-286607 by Asymmetric Cyclization of Alkylidene Barbiturates
Ruble, J. Craig, Hurd, Alexander R, Johnson, Timothy A, Sherry, Debra A, Barbachyn, Michael R, Toogood, Peter L, Bundy, Gordon L, Graber, David R, Kamilar, Gregg M
Published in Journal of the American Chemical Society (25.03.2009)
Published in Journal of the American Chemical Society (25.03.2009)
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Journal Article
Cecal microbiota transplantation: unique influence of cecal microbiota from divergently selected inbred donor lines on cecal microbial profile, serotonergic activity, and aggressive behavior of recipient chickens
Fu, Yuechi, Hu, Jiaying, Erasmus, Marisa A, Zhang, Huanmin, Johnson, Timothy A, Cheng, Hengwei
Published in Journal of animal science and biotechnology (02.05.2023)
Published in Journal of animal science and biotechnology (02.05.2023)
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Journal Article
The bovine nasal fungal community and associations with bovine respiratory disease
Centeno-Martinez, Ruth Eunice, Mohan, Suraj, Davidson, Josiah Levi, Schoonmaker, Jon P, Ault, Aaron, Verma, Mohit S, Johnson, Timothy A
Published in Frontiers in veterinary science (27.06.2023)
Published in Frontiers in veterinary science (27.06.2023)
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Journal Article
Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay
Chai, Benli, Tsoi, Tamara V, Iwai, Shoko, Liu, Cun, Fish, Jordan A, Gu, Cheng, Johnson, Timothy A, Zylstra, Gerben, Teppen, Brian J, Li, Hui, Hashsham, Syed A, Boyd, Stephen A, Cole, James R, Tiedje, James M
Published in PloS one (16.06.2016)
Published in PloS one (16.06.2016)
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Journal Article
Behavior and Immune Response of Conventional and Slow-Growing Broilers to Salmonella Typhimurium
Snyder, Ashlyn M, Riley, Sean P, Robison, Cara I, Karcher, Darrin M, Wickware, Carmen L, Johnson, Timothy A, Weimer, Shawna L
Published in Frontiers in physiology (02.05.2022)
Published in Frontiers in physiology (02.05.2022)
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Journal Article
Characterizing the Flavor Precursors and Liberation Mechanisms of Various Dry-Aging Methods in Cull Beef Loins Using Metabolomics and Microbiome Approaches
Setyabrata, Derico, Vierck, Kelly, Sheets, Tessa R, Legako, Jerrad F, Cooper, Bruce R, Johnson, Timothy A, Kim, Yuan H Brad
Published in Metabolites (24.05.2022)
Published in Metabolites (24.05.2022)
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Journal Article
Dynamics of the nasopharyngeal microbiome of apparently healthy calves and those with clinical symptoms of bovine respiratory disease from disease diagnosis to recovery
Centeno-Martinez, Ruth Eunice, Klopp, Rebecca N., Koziol, Jennifer, Boerman, Jacquelyn P., Johnson, Timothy A.
Published in Frontiers in veterinary science (16.11.2023)
Published in Frontiers in veterinary science (16.11.2023)
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Journal Article