A Revised Timescale for Human Evolution Based on Ancient Mitochondrial Genomes
Fu, Qiaomei, Mittnik, Alissa, Johnson, Philip L.F., Bos, Kirsten, Lari, Martina, Bollongino, Ruth, Sun, Chengkai, Giemsch, Liane, Schmitz, Ralf, Burger, Joachim, Ronchitelli, Anna Maria, Martini, Fabio, Cremonesi, Renata G., Svoboda, Jiří, Bauer, Peter, Caramelli, David, Castellano, Sergi, Reich, David, Pääbo, Svante, Krause, Johannes
Published in Current biology (08.04.2013)
Published in Current biology (08.04.2013)
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Utility of R0 as a predictor of disease invasion in structured populations
Cross, Paul C, Johnson, Philip L.F, Lloyd-Smith, James O, Getz, Wayne M
Published in Journal of the Royal Society interface (22.04.2007)
Published in Journal of the Royal Society interface (22.04.2007)
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Genome sequence of a 45,000-year-old modern human from western Siberia
Fu, Qiaomei, Li, Heng, Moorjani, Priya, Jay, Flora, Slepchenko, Sergey M., Bondarev, Aleksei A., Johnson, Philip L. F., Aximu-Petri, Ayinuer, Prüfer, Kay, de Filippo, Cesare, Meyer, Matthias, Zwyns, Nicolas, Salazar-García, Domingo C., Kuzmin, Yaroslav V., Keates, Susan G., Kosintsev, Pavel A., Razhev, Dmitry I., Richards, Michael P., Peristov, Nikolai V., Lachmann, Michael, Douka, Katerina, Higham, Thomas F. G., Slatkin, Montgomery, Hublin, Jean-Jacques, Reich, David, Kelso, Janet, Viola, T. Bence, Pääbo, Svante
Published in Nature (London) (23.10.2014)
Published in Nature (London) (23.10.2014)
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Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
Burbano, Hernán A, Hodges, Emily, Green, Richard E, Briggs, Adrian W, Krause, Johannes, Meyer, Matthias, Good, Jeffrey M, Maricic, Tomislav, Johnson, Philip L.F, Xuan, Zhenyu, Rooks, Michelle, Bhattacharjee, Arindam, Brizuela, Leonardo, Albert, Frank W, de la Rasilla, Marco, Fortea, Javier, Rosas, Antonio, Lachmann, Michael, Hannon, Gregory J, Pääbo, Svante
Published in Science (American Association for the Advancement of Science) (07.05.2010)
Published in Science (American Association for the Advancement of Science) (07.05.2010)
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mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Jónsson, Hákon, Ginolhac, Aurélien, Schubert, Mikkel, Johnson, Philip L F, Orlando, Ludovic
Published in Bioinformatics (01.07.2013)
Published in Bioinformatics (01.07.2013)
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The complete genome sequence of a Neanderthal from the Altai Mountains
Prüfer, Kay, Racimo, Fernando, Patterson, Nick, Jay, Flora, Sankararaman, Sriram, Sawyer, Susanna, Heinze, Anja, Renaud, Gabriel, Sudmant, Peter H., de Filippo, Cesare, Li, Heng, Mallick, Swapan, Dannemann, Michael, Fu, Qiaomei, Kircher, Martin, Kuhlwilm, Martin, Lachmann, Michael, Meyer, Matthias, Ongyerth, Matthias, Siebauer, Michael, Theunert, Christoph, Tandon, Arti, Moorjani, Priya, Pickrell, Joseph, Mullikin, James C., Vohr, Samuel H., Green, Richard E., Hellmann, Ines, Johnson, Philip L. F., Blanche, Hélène, Cann, Howard, Kitzman, Jacob O., Shendure, Jay, Eichler, Evan E., Lein, Ed S., Bakken, Trygve E., Golovanova, Liubov V., Doronichev, Vladimir B., Shunkov, Michael V., Derevianko, Anatoli P., Viola, Bence, Slatkin, Montgomery, Reich, David, Kelso, Janet, Pääbo, Svante
Published in Nature (London) (02.01.2014)
Published in Nature (London) (02.01.2014)
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Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
Orlando, Ludovic, Ginolhac, Aurélien, Zhang, Guojie, Froese, Duane, Albrechtsen, Anders, Stiller, Mathias, Schubert, Mikkel, Cappellini, Enrico, Petersen, Bent, Moltke, Ida, Johnson, Philip L. F., Fumagalli, Matteo, Vilstrup, Julia T., Raghavan, Maanasa, Korneliussen, Thorfinn, Malaspinas, Anna-Sapfo, Vogt, Josef, Szklarczyk, Damian, Kelstrup, Christian D., Vinther, Jakob, Dolocan, Andrei, Stenderup, Jesper, Velazquez, Amhed M. V., Cahill, James, Rasmussen, Morten, Wang, Xiaoli, Min, Jiumeng, Zazula, Grant D., Seguin-Orlando, Andaine, Mortensen, Cecilie, Magnussen, Kim, Thompson, John F., Weinstock, Jacobo, Gregersen, Kristian, Røed, Knut H., Eisenmann, Véra, Rubin, Carl J., Miller, Donald C., Antczak, Douglas F., Bertelsen, Mads F., Brunak, Søren, Al-Rasheid, Khaled A. S., Ryder, Oliver, Andersson, Leif, Mundy, John, Krogh, Anders, Gilbert, M. Thomas P., Kjær, Kurt, Sicheritz-Ponten, Thomas, Jensen, Lars Juhl, Olsen, Jesper V., Hofreiter, Michael, Nielsen, Rasmus, Shapiro, Beth, Wang, Jun, Willerslev, Eske
Published in Nature (London) (04.07.2013)
Published in Nature (London) (04.07.2013)
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Draft Sequence of the Neandertal Genome
Green, Richard E, Krause, Johannes, Briggs, Adrian W, Maricic, Tomislav, Stenzel, Udo, Kircher, Martin, Patterson, Nick, Li, Heng, Zhai, Weiwei, Fritz, Markus Hsi-Yang, Hansen, Nancy F, Durand, Eric Y, Malaspinas, Anna-Sapfo, Jensen, Jeffrey D, Marques-Bonet, Tomas, Alkan, Can, Prüfer, Kay, Meyer, Matthias, Burbano, Hernán A, Good, Jeffrey M, Schultz, Rigo, Aximu-Petri, Ayinuer, Butthof, Anne, Höber, Barbara, Höffner, Barbara, Siegemund, Madlen, Weihmann, Antje, Nusbaum, Chad, Lander, Eric S, Russ, Carsten, Novod, Nathaniel, Affourtit, Jason, Egholm, Michael, Verna, Christine, Rudan, Pavao, Brajkovic, Dejana, Kucan, Željko, Gušic, Ivan, Doronichev, Vladimir B, Golovanova, Liubov V, Lalueza-Fox, Carles, de la Rasilla, Marco, Fortea, Javier, Rosas, Antonio, Schmitz, Ralf W, Johnson, Philip L.F, Eichler, Evan E, Falush, Daniel, Birney, Ewan, Mullikin, James C, Slatkin, Montgomery, Nielsen, Rasmus, Kelso, Janet, Lachmann, Michael, Reich, David, Pääbo, Svante
Published in Science (American Association for the Advancement of Science) (07.05.2010)
Published in Science (American Association for the Advancement of Science) (07.05.2010)
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Genetic history of an archaic hominin group from Denisova Cave in Siberia
Reich, David, Viola, Bence, Pääbo, Svante, Green, Richard E, Kircher, Martin, Krause, Johannes, Patterson, Nick, Durand, Eric Y, Briggs, Adrian W, Stenzel, Udo, Johnson, Philip L. F, Maricic, Tomislav, Good, Jeffrey M, Marques-Bonet, Tomas, Alkan, Can, Fu, Qiaomei, Mallick, Swapan, Li, Heng, Meyer, Matthias, Eichler, Evan E, Stoneking, Mark, Richards, Michael, Talamo, Sahra, Shunkov, Michael V, Derevianko, Anatoli P, Hublin, Jean-Jacques, Kelso, Janet, Slatkin, Montgomery
Published in Nature (London) (23.12.2010)
Published in Nature (London) (23.12.2010)
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Evolutionary consequences of delaying intervention for monkeypox
Johnson, Philip L F, Bergstrom, Carl T, Regoes, Roland R, Longini, Ira M, Halloran, M Elizabeth, Antia, Rustom
Published in The Lancet (British edition) (08.10.2022)
Published in The Lancet (British edition) (08.10.2022)
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Immune loss as a driver of coexistence during host-phage coevolution
Weissman, JL, Holmes, Rayshawn, Barrangou, Rodolphe, Moineau, Sylvain, Fagan, William F, Levin, Bruce, Johnson, Philip L F
Published in The ISME Journal (01.02.2018)
Published in The ISME Journal (01.02.2018)
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Avoidance of Self during CRISPR Immunization
Weissman, Jake L., Stoltzfus, Arlin, Westra, Edze R., Johnson, Philip L.F.
Published in Trends in microbiology (Regular ed.) (01.07.2020)
Published in Trends in microbiology (Regular ed.) (01.07.2020)
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Assuring the quality of next-generation sequencing in clinical laboratory practice
Gargis, Amy S, Kalman, Lisa, Berry, Meredith W, Bick, David P, Dimmock, David P, Hambuch, Tina, Lu, Fei, Lyon, Elaine, Voelkerding, Karl V, Zehnbauer, Barbara A, Agarwala, Richa, Bennett, Sarah F, Chen, Bin, Chin, Ephrem L H, Compton, John G, Das, Soma, Farkas, Daniel H, Ferber, Matthew J, Funke, Birgit H, Furtado, Manohar R, Ganova-Raeva, Lilia M, Geigenmüller, Ute, Gunselman, Sandra J, Hegde, Madhuri R, Johnson, Philip L F, Kasarskis, Andrew, Kulkarni, Shashikant, Lenk, Thomas, Liu, C S Jonathan, Manion, Megan, Manolio, Teri A, Mardis, Elaine R, Merker, Jason D, Rajeevan, Mangalathu S, Reese, Martin G, Rehm, Heidi L, Simen, Birgitte B, Yeakley, Joanne M, Zook, Justin M, Lubin, Ira M
Published in Nature biotechnology (01.11.2012)
Published in Nature biotechnology (01.11.2012)
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Patterns of Damage in Genomic DNA Sequences from a Neandertal
Briggs, Adrian W., Stenzel, Udo, Johnson, Philip L. F., Green, Richard E., Kelso, Janet, Prüfer, Kay, Meyer, Matthias, Krause, Johannes, Ronan, Michael T., Lachmann, Michael, Pääbo, Svante
Published in Proceedings of the National Academy of Sciences - PNAS (11.09.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (11.09.2007)
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Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination
Akondy, Rama S., Johnson, Philip L. F., Nakaya, Helder I., Edupuganti, Srilatha, Mulligan, Mark J., Lawson, Benton, Miller, Joseph D., Pulendran, Bali, Antia, Rustom, Ahmed, Rafi
Published in Proceedings of the National Academy of Sciences - PNAS (10.03.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (10.03.2015)
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Peripheral selection rather than thymic involution explains sudden contraction in naive CD4 T-cell diversity with age
Johnson, Philip L. F., Yates, Andrew J., Goronzy, Jörg J., Antia, Rustom
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2012)
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Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean
Schroeder, Hannes, Ávila-Arcos, María C., Malaspinas, Anna-Sapfo, Poznik, G. David, Sandoval-Velasco, Marcela, Carpenter, Meredith L., Moreno-Mayar, José Víctor, Sikora, Martin, Johnson, Philip L. F., Allentoft, Morten Erik, Samaniego, José Alfredo, Haviser, Jay B., Dee, Michael W., Stafford, Thomas W., Salas, Antonio, Orlando, Ludovic, Willerslev, Eske, Bustamante, Carlos D., Gilbert, M. Thomas P.
Published in Proceedings of the National Academy of Sciences - PNAS (24.03.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (24.03.2015)
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