Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Digitize your Biology! Modeling multicellular systems through interpretable cell behavior
Johnson, Jeanette A I, Stein-O'Brien, Genevieve L, Booth, Max, Heiland, Randy, Kurtoglu, Furkan, Bergman, Daniel R, Bucher, Elmar, Deshpande, Atul, Forjaz, André, Getz, Michael, Godet, Ines, Lyman, Melissa, Metzcar, John, Mitchell, Jacob, Raddatz, Andrew, Rocha, Heber, Solorzano, Jacobo, Sundus, Aneequa, Wang, Yafei, Gilkes, Danielle, Kagohara, Luciane T, Kiemen, Ashley L, Thompson, Elizabeth D, Wirtz, Denis, Wu, Pei-Hsun, Zaidi, Neeha, Zheng, Lei, Zimmerman, Jacquelyn W, Jaffee, Elizabeth M, Hwan Chang, Young, Coussens, Lisa M, Gray, Joe W, Heiser, Laura M, Fertig, Elana J, Macklin, Paul
Published in bioRxiv (05.11.2023)
Published in bioRxiv (05.11.2023)
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