Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates
Lemon, Jamie K, Khil, Pavel P, Frank, Karen M, Dekker, John P
Published in Journal of clinical microbiology (01.12.2017)
Published in Journal of clinical microbiology (01.12.2017)
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Association Between Caseload Surge and COVID-19 Survival in 558 U.S. Hospitals, March to August 2020
Kadri, Sameer S, Sun, Junfeng, Lawandi, Alexander, Strich, Jeffrey R, Busch, Lindsay M, Keller, Michael, Babiker, Ahmed, Yek, Christina, Malik, Seidu, Krack, Janell, Dekker, John P, Spaulding, Alicen B, Ricotta, Emily, Powers, John H, Rhee, Chanu, Klompas, Michael, Athale, Janhavi, Boehmer, Tegan K, Gundlapalli, Adi V, Bentley, William, Datta, S Deblina, Danner, Robert L, Demirkale, Cumhur Y, Warner, Sarah
Published in Annals of Internal Medicine (01.09.2021)
Published in Annals of Internal Medicine (01.09.2021)
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Hypermutator strains of Pseudomonas aeruginosa reveal novel pathways of resistance to combinations of cephalosporin antibiotics and beta-lactamase inhibitors
Dulanto Chiang, Augusto, Patil, Prashant P, Beka, Lidia, Youn, Jung-Ho, Launay, Adrien, Bonomo, Robert A, Khil, Pavel P, Dekker, John P
Published in PLoS biology (18.11.2022)
Published in PLoS biology (18.11.2022)
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Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance
Weingarten, Rebecca A, Johnson, Ryan C, Conlan, Sean, Ramsburg, Amanda M, Dekker, John P, Lau, Anna F, Khil, Pavel, Odom, Robin T, Deming, Clay, Park, Morgan, Thomas, Pamela J, Henderson, David K, Palmore, Tara N, Segre, Julia A, Frank, Karen M
Published in mBio (06.02.2018)
Published in mBio (06.02.2018)
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Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae
Conlan, Sean, Thomas, Pamela J, Deming, Clayton, Park, Morgan, Lau, Anna F, Dekker, John P, Snitkin, Evan S, Clark, Tyson A, Luong, Khai, Song, Yi, Tsai, Yu-Chih, Boitano, Matthew, Dayal, Jyoti, Brooks, Shelise Y, Schmidt, Brian, Young, Alice C, Thomas, James W, Bouffard, Gerard G, Blakesley, Robert W, Mullikin, James C, Korlach, Jonas, Henderson, David K, Frank, Karen M, Palmore, Tara N, Segre, Julia A
Published in Science translational medicine (17.09.2014)
Published in Science translational medicine (17.09.2014)
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Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks
Cerqueira, Gustavo C., Earl, Ashlee M., Ernst, Christoph M., Grad, Yonatan H., Dekker, John P., Feldgarden, Michael, Chapman, Sinéad B., Reis-Cunha, João L., Shea, Terrance P., Young, Sarah, Zeng, Qiandong, Delaney, Mary L., Kim, Diane, Peterson, Ellena M., O’Brien, Thomas F., Ferraro, Mary Jane, Hooper, David C., Huang, Susan S., Kirby, James E., Onderdonk, Andrew B., Birren, Bruce W., Hung, Deborah T., Cosimi, Lisa A., Wortman, Jennifer R., Murphy, Cheryl I., Hanage, William P.
Published in Proceedings of the National Academy of Sciences - PNAS (31.01.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (31.01.2017)
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A rapid matrix-assisted laser desorption ionization-time of flight mass spectrometry-based method for single-plasmid tracking in an outbreak of carbapenem-resistant Enterobacteriaceae
Lau, Anna F, Wang, Honghui, Weingarten, Rebecca A, Drake, Steven K, Suffredini, Anthony F, Garfield, Mark K, Chen, Yong, Gucek, Marjan, Youn, Jung-Ho, Stock, Frida, Tso, Hanna, DeLeo, Jim, Cimino, James J, Frank, Karen M, Dekker, John P
Published in Journal of clinical microbiology (01.08.2014)
Published in Journal of clinical microbiology (01.08.2014)
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Journal Article
Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization
Conlan, Sean, Park, Morgan, Deming, Clayton, Thomas, Pamela J, Young, Alice C, Coleman, Holly, Sison, Christina, Weingarten, Rebecca A, Lau, Anna F, Dekker, John P, Palmore, Tara N, Frank, Karen M, Segre, Julia A
Published in mBio (28.06.2016)
Published in mBio (28.06.2016)
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Deciphering the Evolution of Cephalosporin Resistance to Ceftolozane-Tazobactam in Pseudomonas aeruginosa
Barnes, Melissa D, Taracila, Magdalena A, Rutter, Joseph D, Bethel, Christopher R, Galdadas, Ioannis, Hujer, Andrea M, Caselli, Emilia, Prati, Fabio, Dekker, John P, Papp-Wallace, Krisztina M, Haider, Shozeb, Bonomo, Robert A
Published in mBio (11.12.2018)
Published in mBio (11.12.2018)
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Mechanisms of Evolution in High-Consequence Drug Resistance Plasmids
He, Susu, Chandler, Michael, Varani, Alessandro M, Hickman, Alison B, Dekker, John P, Dyda, Fred
Published in mBio (06.12.2016)
Published in mBio (06.12.2016)
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Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group
Tisza, Michael J., Smith, Derek D. N., Clark, Andrew E., Youn, Jung-Ho, Khil, Pavel P., Dekker, John P.
Published in Nature communications (10.07.2023)
Published in Nature communications (10.07.2023)
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Journal Article
Dynamic Emergence of Mismatch Repair Deficiency Facilitates Rapid Evolution of Ceftazidime-Avibactam Resistance in Pseudomonas aeruginosa Acute Infection
Khil, Pavel P, Dulanto Chiang, Augusto, Ho, Jonathan, Youn, Jung-Ho, Lemon, Jamie K, Gea-Banacloche, Juan, Frank, Karen M, Parta, Mark, Bonomo, Robert A, Dekker, John P
Published in mBio (17.09.2019)
Published in mBio (17.09.2019)
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Journal Article
Peptide Markers for Rapid Detection of KPC Carbapenemase by LC-MS/MS
Wang, Honghui, Drake, Steven K., Youn, Jung-Ho, Rosenberg, Avi Z., Chen, Yong, Gucek, Marjan, Suffredini, Anthony F., Dekker, John P.
Published in Scientific reports (31.05.2017)
Published in Scientific reports (31.05.2017)
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Regional centromere configuration in the fungal pathogens of the Pneumocystis genus
Cissé, Ousmane H, Curran, Shelly J, Folco, H Diego, Liu, Yueqin, Bishop, Lisa, Wang, Honghui, Fischer, Elizabeth R, Davis, A Sally, Combs, Christian, Thapar, Sabrina, Dekker, John P, Grewal, Shiv, Cushion, Melanie, Ma, Liang, Kovacs, Joseph A
Published in mBio (13.03.2024)
Published in mBio (13.03.2024)
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Microneedle-Based Intradermal Delivery of the Anthrax Recombinant Protective Antigen Vaccine
Mikszta, John A, Dekker, John P. III, Harvey, Noel G, Dean, Cheryl H, Brittingham, John M, Huang, Joanne, Sullivan, Vincent J, Dyas, Beverly, Roy, Chad J, Ulrich, Robert G
Published in Infection and Immunity (01.12.2006)
Published in Infection and Immunity (01.12.2006)
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Plasmid Dissemination and Selection of a Multidrug-Resistant Klebsiella pneumoniae Strain during Transplant-Associated Antibiotic Therapy
Conlan, Sean, Lau, Anna F, Deming, Clay, Spalding, Christine D, Lee-Lin, ShihQueen, Thomas, Pamela J, Park, Morgan, Dekker, John P, Frank, Karen M, Palmore, Tara N, Segre, Julia A
Published in mBio (08.10.2019)
Published in mBio (08.10.2019)
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