Diversity, structure and convergent evolution of the global sponge microbiome
Thomas, Torsten, Moitinho-Silva, Lucas, Lurgi, Miguel, Björk, Johannes R., Easson, Cole, Astudillo-García, Carmen, Olson, Julie B., Erwin, Patrick M., López-Legentil, Susanna, Luter, Heidi, Chaves-Fonnegra, Andia, Costa, Rodrigo, Schupp, Peter J., Steindler, Laura, Erpenbeck, Dirk, Gilbert, Jack, Knight, Rob, Ackermann, Gail, Victor Lopez, Jose, Taylor, Michael W., Thacker, Robert W., Montoya, Jose M., Hentschel, Ute, Webster, Nicole S.
Published in Nature communications (16.06.2016)
Published in Nature communications (16.06.2016)
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Journal Article
Gut microbiome heritability is nearly universal but environmentally contingent
Grieneisen, Laura, Dasari, Mauna, Gould, Trevor J, Björk, Johannes R, Grenier, Jean-Christophe, Yotova, Vania, Jansen, David, Gottel, Neil, Gordon, Jacob B, Learn, Niki H, Gesquiere, Laurence R, Wango, Tim L, Mututua, Raphael S, Warutere, J Kinyua, Siodi, Long'ida, Gilbert, Jack A, Barreiro, Luis B, Alberts, Susan C, Tung, Jenny, Archie, Elizabeth A, Blekhman, Ran
Published in Science (American Association for the Advancement of Science) (09.07.2021)
Published in Science (American Association for the Advancement of Science) (09.07.2021)
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Journal Article
Uncovering the drivers of host‐associated microbiota with joint species distribution modelling
Björk, Johannes R., Hui, Francis K. C., O'Hara, Robert B., Montoya, Jose M.
Published in Molecular ecology (01.06.2018)
Published in Molecular ecology (01.06.2018)
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Journal Article
Mucosal host-microbe interactions associate with clinical phenotypes in inflammatory bowel disease
Hu, Shixian, Bourgonje, Arno R., Gacesa, Ranko, Jansen, Bernadien H., Björk, Johannes R., Bangma, Amber, Hidding, Iwan J., van Dullemen, Hendrik M., Visschedijk, Marijn C., Faber, Klaas Nico, Dijkstra, Gerard, Harmsen, Hermie J. M., Festen, Eleonora A. M., Vich Vila, Arnau, Spekhorst, Lieke M., Weersma, Rinse K.
Published in Nature communications (17.02.2024)
Published in Nature communications (17.02.2024)
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Journal Article
Gut microbiome dysbiosis is associated with increased mortality after solid organ transplantation
Swarte, J Casper, Li, Yanni, Hu, Shixian, Björk, Johannes R, Gacesa, Ranko, Vich Vila, Arnau, Douwes, Rianne M, Collij, Valerie, Kurilshikov, Alexander, Post, Adrian, Klaassen, Marjolein A Y, Eisenga, Michele F, Gomes-Neto, António W, Kremer, Daan, Jansen, Bernadien H, Knobbe, Tim J, Berger, Stefan P, Sanders, Jan-Stephan F, Heiner-Fokkema, M Rebecca, Porte, Robert J, Cuperus, Frans J C, de Meijer, Vincent E, Wijmenga, Cisca, Festen, Eleonora A M, Zhernakova, Alexandra, Fu, Jingyuan, Harmsen, Hermie J M, Blokzijl, Hans, Bakker, Stephan J L, Weersma, Rinse K
Published in Science translational medicine (31.08.2022)
Published in Science translational medicine (31.08.2022)
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Journal Article
The sponge microbiome project
Moitinho-Silva, Lucas, Nielsen, Shaun, Amir, Amnon, Gonzalez, Antonio, Ackermann, Gail L, Cerrano, Carlo, Astudillo-Garcia, Carmen, Easson, Cole, Sipkema, Detmer, Liu, Fang, Steinert, Georg, Kotoulas, Giorgos, McCormack, Grace P, Feng, Guofang, Bell, James J, Vicente, Jan, Björk, Johannes R, Montoya, Jose M, Olson, Julie B, Reveillaud, Julie, Steindler, Laura, Pineda, Mari-Carmen, Marra, Maria V, Ilan, Micha, Taylor, Michael W, Polymenakou, Paraskevi, Erwin, Patrick M, Schupp, Peter J, Simister, Rachel L, Knight, Rob, Thacker, Robert W, Costa, Rodrigo, Hill, Russell T, Lopez-Legentil, Susanna, Dailianis, Thanos, Ravasi, Timothy, Hentschel, Ute, Li, Zhiyong, Webster, Nicole S, Thomas, Torsten
Published in Gigascience (01.10.2017)
Published in Gigascience (01.10.2017)
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Journal Article
Longitudinal gut microbiome changes in immune checkpoint blockade-treated advanced melanoma
Björk, Johannes R., Bolte, Laura A., Maltez Thomas, Andrew, Lee, Karla A., Rossi, Niccolo, Wind, Thijs T., Smit, Lotte M., Armanini, Federica, Asnicar, Francesco, Blanco-Miguez, Aitor, Board, Ruth, Calbet-Llopart, Neus, Derosa, Lisa, Dhomen, Nathalie, Brooks, Kelly, Harland, Mark, Harries, Mark, Lorigan, Paul, Manghi, Paolo, Marais, Richard, Newton-Bishop, Julia, Nezi, Luigi, Pinto, Federica, Potrony, Miriam, Puig, Susana, Serra-Bellver, Patricio, Shaw, Heather M., Tamburini, Sabrina, Valpione, Sara, Waldron, Levi, Zitvogel, Laurence, Zolfo, Moreno, de Vries, Elisabeth G. E., Nathan, Paul, Fehrmann, Rudolf S. N., Spector, Tim D., Bataille, Véronique, Segata, Nicola, Hospers, Geke A. P., Weersma, Rinse K.
Published in Nature medicine (01.03.2024)
Published in Nature medicine (01.03.2024)
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Journal Article
Association of a Mediterranean Diet With Outcomes for Patients Treated With Immune Checkpoint Blockade for Advanced Melanoma
Bolte, Laura A, Lee, Karla A, Björk, Johannes R, Leeming, Emily R, Campmans-Kuijpers, Marjo J E, de Haan, Jacco J, Vila, Arnau Vich, Maltez-Thomas, Andrew, Segata, Nicola, Board, Ruth, Harries, Mark, Lorigan, Paul, de Vries, Elisabeth G E, Nathan, Paul, Fehrmann, Rudolf, Bataille, Véronique, Spector, Tim D, Hospers, Geke A P, Weersma, Rinse K
Published in JAMA oncology (01.05.2023)
Published in JAMA oncology (01.05.2023)
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Journal Article
The gut microbiome across the cardiovascular risk spectrum
Prins, Femke M, Collij, Valerie, Groot, Hilde E, Björk, Johannes R, Swarte, J Casper, Andreu-Sánchez, Sergio, Jansen, Bernadien H, Fu, Jingyuan, Harmsen, Hermie J M, Zhernakova, Alexandra, Lipsic, Erik, van der Harst, Pim, Weersma, Rinse K, Gacesa, Ranko
Published in European journal of preventive cardiology (03.06.2024)
Published in European journal of preventive cardiology (03.06.2024)
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Journal Article
Gut Microbiome Composition in Dystonia Patients
Timmers, Elze R, Swarte, J Casper, Gacesa, Ranko, Björk, Johannes R, Weersma, Rinse K, Tijssen, Marina A J, de Koning, Tom J, Harmsen, Hermie J M, Niezen-Koning, Klary E
Published in International journal of molecular sciences (25.01.2023)
Published in International journal of molecular sciences (25.01.2023)
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Journal Article
Specificity and temporal dynamics of complex bacteria--sponge symbiotic interactions
Björk, Johannes R, Díez-Vives, C, Coma, Rafel, Ribes, Marta, Montoya, José M
Published in Ecology (Durham) (01.12.2013)
Published in Ecology (Durham) (01.12.2013)
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Journal Article
Synchrony and idiosyncrasy in the gut microbiome of wild baboons
Björk, Johannes R., Dasari, Mauna R., Roche, Kim, Grieneisen, Laura, Gould, Trevor J., Grenier, Jean-Christophe, Yotova, Vania, Gottel, Neil, Jansen, David, Gesquiere, Laurence R., Gordon, Jacob B., Learn, Niki H., Wango, Tim L., Mututua, Raphael S., Kinyua Warutere, J., Siodi, Long’ida, Mukherjee, Sayan, Barreiro, Luis B., Alberts, Susan C., Gilbert, Jack A., Tung, Jenny, Blekhman, Ran, Archie, Elizabeth A.
Published in Nature ecology & evolution (01.07.2022)
Published in Nature ecology & evolution (01.07.2022)
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Journal Article
Circulating inflammatory proteins associate with response to immune checkpoint inhibition therapy in patients with advanced melanoma
Rossi, Niccolò, Lee, Karla A., Bermudez, Maria V., Visconti, Alessia, Thomas, Andrew Maltez, Bolte, Laura A., Björk, Johannes R., de Ruijter, Laura Kist, Newton-Bishop, Julia, Harland, Mark, Shaw, Heather M., Harries, Mark, Sacco, Joseph, Board, Ruth, Lorigan, Paul, de Vries, Elisabeth G.E., Segata, Nicola, Taams, Leonie, Papa, Sophie, Spector, Tim D., Nathan, Paul, Weersma, Rinse K., Hospers, Geke A.P., Fehrmann, Rudolf S.N., Bataille, Veronique, Falchi, Mario
Published in EBioMedicine (01.09.2022)
Published in EBioMedicine (01.09.2022)
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Journal Article
Custom scoring based on ecological topology of gut microbiota associated with cancer immunotherapy outcome
Derosa, Lisa, Iebba, Valerio, Silva, Carolina Alves Costa, Piccinno, Gianmarco, Wu, Guojun, Lordello, Leonardo, Routy, Bertrand, Zhao, Naisi, Thelemaque, Cassandra, Birebent, Roxanne, Marmorino, Federica, Fidelle, Marine, Messaoudene, Meriem, Thomas, Andrew Maltez, Zalcman, Gerard, Friard, Sylvie, Mazieres, Julien, Audigier-Valette, Clarisse, Sibilot, Denis Moro, Goldwasser, François, Scherpereel, Arnaud, Pegliasco, Hervé, Ghiringhelli, François, Bouchard, Nicole, Sow, Cissé, Darik, Ines, Zoppi, Silvia, Ly, Pierre, Reni, Anna, Daillère, Romain, Deutsch, Eric, Lee, Karla A., Bolte, Laura A., Björk, Johannes R., Weersma, Rinse K., Barlesi, Fabrice, Padilha, Lucas, Finzel, Ana, Isaksen, Morten L., Escudier, Bernard, Albiges, Laurence, Planchard, David, André, Fabrice, Cremolini, Chiara, Martinez, Stéphanie, Besse, Benjamin, Zhao, Liping, Segata, Nicola, Wojcik, Jérôme, Kroemer, Guido, Zitvogel, Laurence
Published in Cell (20.06.2024)
Published in Cell (20.06.2024)
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Multiple indicators of gut dysbiosis predict all-cause and cause-specific mortality in solid organ transplant recipients
Swarte, J Casper, Zhang, Shuyan, Nieuwenhuis, Lianne M, Gacesa, Ranko, Knobbe, Tim J, De Meijer, Vincent E, Damman, Kevin, Verschuuren, Erik A M, Gan, Tji C, Fu, Jingyuan, Zhernakova, Alexandra, Harmsen, Hermie J M, Blokzijl, Hans, Bakker, Stephan J L, Björk, Johannes R, Weersma, Rinse K
Published in Gut (01.10.2024)
Published in Gut (01.10.2024)
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Total serum N-glycans associate with response to immune checkpoint inhibition therapy and survival in patients with advanced melanoma
Visconti, Alessia, Rossi, Niccolò, Deriš, Helena, Lee, Karla A, Hanić, Maja, Trbojević-Akmačić, Irena, Thomas, Andrew M, Bolte, Laura A, Björk, Johannes R, Hooiveld-Noeken, Jahlisa S, Board, Ruth, Harland, Mark, Newton-Bishop, Julia, Harries, Mark, Sacco, Joseph J, Lorigan, Paul, Shaw, Heather M, de Vries, Elisabeth G E, Fehrmann, Rudolf S N, Weersma, Rinse K, Spector, Tim D, Nathan, Paul, Hospers, Geke A P, Sasieni, Peter, Bataille, Veronique, Lauc, Gordan, Falchi, Mario
Published in BMC cancer (18.02.2023)
Published in BMC cancer (18.02.2023)
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