Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota
Stein, Richard R, Bucci, Vanni, Toussaint, Nora C, Buffie, Charlie G, Rätsch, Gunnar, Pamer, Eric G, Sander, Chris, Xavier, João B
Published in PLoS computational biology (01.12.2013)
Published in PLoS computational biology (01.12.2013)
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Journal Article
Emergence of spatial structure in cell groups and the evolution of cooperation
Nadell, Carey D, Foster, Kevin R, Xavier, João B
Published in PLoS computational biology (01.03.2010)
Published in PLoS computational biology (01.03.2010)
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Journal Article
Social evolution in multispecies biofilms
Mitri, Sara, Xavier, João B, Foster, Kevin R
Published in Proceedings of the National Academy of Sciences - PNAS (28.06.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (28.06.2011)
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Journal Article
Cooperation and conflict in microbial biofilms
Xavier, Joao B, Foster, Kevin R
Published in Proceedings of the National Academy of Sciences - PNAS (16.01.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (16.01.2007)
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Journal Article
Animal Behavior and the Microbiome
Ezenwa, Vanessa O., Gerardo, Nicole M., Inouye, David W., Medina, Mónica, Xavier, Joao B.
Published in Science (American Association for the Advancement of Science) (12.10.2012)
Published in Science (American Association for the Advancement of Science) (12.10.2012)
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Journal Article
Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant
Taur, Ying, Coyte, Katharine, Schluter, Jonas, Robilotti, Elizabeth, Figueroa, Cesar, Gjonbalaj, Mergim, Littmann, Eric R, Ling, Lilan, Miller, Liza, Gyaltshen, Yangtsho, Fontana, Emily, Morjaria, Sejal, Gyurkocza, Boglarka, Perales, Miguel-Angel, Castro-Malaspina, Hugo, Tamari, Roni, Ponce, Doris, Koehne, Guenther, Barker, Juliet, Jakubowski, Ann, Papadopoulos, Esperanza, Dahi, Parastoo, Sauter, Craig, Shaffer, Brian, Young, James W, Peled, Jonathan, Meagher, Richard C, Jenq, Robert R, van den Brink, Marcel R M, Giralt, Sergio A, Pamer, Eric G, Xavier, Joao B
Published in Science translational medicine (26.09.2018)
Published in Science translational medicine (26.09.2018)
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Journal Article
Different levels of catabolite repression optimize growth in stable and variable environments
New, Aaron M, Cerulus, Bram, Govers, Sander K, Perez-Samper, Gemma, Zhu, Bo, Boogmans, Sarah, Xavier, Joao B, Verstrepen, Kevin J
Published in PLoS biology (01.01.2014)
Published in PLoS biology (01.01.2014)
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Journal Article
Intestinal Domination and the Risk of Bacteremia in Patients Undergoing Allogeneic Hematopoietic Stem Cell Transplantation
Taur, Ying, Xavier, Joao B., Lipuma, Lauren, Ubeda, Carles, Goldberg, Jenna, Gobourne, Asia, Lee, Yeon Joo, Dubin, Krista A., Socci, Nicholas D., Viale, Agnes, Perales, Miguel-Angel, Jenq, Robert R., van den Brink, Marcel R. M., Pamer, Eric G.
Published in Clinical infectious diseases (01.10.2012)
Published in Clinical infectious diseases (01.10.2012)
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Journal Article
Human symbionts inject and neutralize antibacterial toxins to persist in the gut
Wexler, Aaron G., Bao, Yiqiao, Whitney, John C., Bobay, Louis-Marie, Xavier, Joao B., Schofield, Whitman B., Barry, Natasha A., Russell, Alistair B., Tran, Bao Q., Goo, Young Ah, Goodlett, David R., Ochman, Howard, Mougous, Joseph D., Goodman, Andrew L.
Published in Proceedings of the National Academy of Sciences - PNAS (29.03.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (29.03.2016)
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Journal Article
Intestinal Microbiota Containing Barnesiella Species Cures Vancomycin-Resistant Enterococcus faecium Colonization
Ubeda, Carles, Bucci, Vanni, Caballero, Silvia, Djukovic, Ana, Toussaint, Nora C, Equinda, Michele, Lipuma, Lauren, Ling, Lilan, Gobourne, Asia, No, Daniel, Taur, Ying, Jenq, Robert R, van den Brink, Marcel R M, Xavier, Joao B, Pamer, Eric G
Published in Infection and Immunity (01.03.2013)
Published in Infection and Immunity (01.03.2013)
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Journal Article
Listening in on the conversation between the human gut microbiome and its host
Lin, Wendy, Djukovic, Ana, Mathur, Deepti, Xavier, Joao B
Published in Current opinion in microbiology (01.10.2021)
Published in Current opinion in microbiology (01.10.2021)
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Journal Article
Microenvironment-derived factors driving metastatic plasticity in melanoma
Kim, Isabella S., Heilmann, Silja, Kansler, Emily R., Zhang, Yan, Zimmer, Milena, Ratnakumar, Kajan, Bowman, Robert L., Simon-Vermot, Theresa, Fennell, Myles, Garippa, Ralph, Lu, Liang, Lee, William, Hollmann, Travis, Xavier, Joao B., White, Richard M.
Published in Nature communications (09.02.2017)
Published in Nature communications (09.02.2017)
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Journal Article
Compositional Lotka-Volterra describes microbial dynamics in the simplex
Joseph, Tyler A, Shenhav, Liat, Xavier, Joao B, Halperin, Eran, Pe'er, Itsik
Published in PLoS computational biology (01.05.2020)
Published in PLoS computational biology (01.05.2020)
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Journal Article
Lactobacillus supports Clostridiales to restrict gut colonization by multidrug-resistant Enterobacteriaceae
Djukovic, Ana, Garzón, María José, Canlet, Cécile, Cabral, Vitor, Lalaoui, Rym, García-Garcerá, Marc, Rechenberger, Julia, Tremblay-Franco, Marie, Peñaranda, Iván, Puchades-Carrasco, Leonor, Pineda-Lucena, Antonio, González-Barberá, Eva María, Salavert, Miguel, López-Hontangas, José Luis, Sanz, Miguel Á., Sanz, Jaime, Kuster, Bernhard, Rolain, Jean-Marc, Debrauwer, Laurent, Xavier, Karina B., Xavier, Joao B., Ubeda, Carles
Published in Nature communications (24.09.2022)
Published in Nature communications (24.09.2022)
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Journal Article
Emergence of spatial structure in the tumor microenvironment due to the Warburg effect
Carmona-Fontaine, Carlos, Bucci, Vanni, Akkari, Leila, Deforet, Maxime, Joyce, Johanna A., Xavier, Joao B.
Published in Proceedings of the National Academy of Sciences - PNAS (26.11.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (26.11.2013)
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Journal Article