Predicting protein–peptide binding residues via interpretable deep learning
Wang, Ruheng, Jin, Junru, Zou, Quan, Nakai, Kenta, Wei, Leyi
Published in Bioinformatics (27.06.2022)
Published in Bioinformatics (27.06.2022)
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Journal Article
DeepBIO: an automated and interpretable deep-learning platform for high-throughput biological sequence prediction, functional annotation and visualization analysis
Wang, Ruheng, Jiang, Yi, Jin, Junru, Yin, Chenglin, Yu, Haoqing, Wang, Fengsheng, Feng, Jiuxin, Su, Ran, Nakai, Kenta, Zou, Quan, Wei, Leyi
Published in Nucleic acids research (24.04.2023)
Published in Nucleic acids research (24.04.2023)
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Journal Article
iDNA-ABF: multi-scale deep biological language learning model for the interpretable prediction of DNA methylations
Jin, Junru, Yu, Yingying, Wang, Ruheng, Zeng, Xin, Pang, Chao, Jiang, Yi, Li, Zhongshen, Dai, Yutong, Su, Ran, Zou, Quan, Nakai, Kenta, Wei, Leyi
Published in Genome Biology (17.10.2022)
Published in Genome Biology (17.10.2022)
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Journal Article
Retrosynthesis prediction with an interpretable deep-learning framework based on molecular assembly tasks
Wang, Yu, Pang, Chao, Wang, Yuzhe, Jin, Junru, Zhang, Jingjie, Zeng, Xiangxiang, Su, Ran, Zou, Quan, Wei, Leyi
Published in Nature communications (03.10.2023)
Published in Nature communications (03.10.2023)
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Explainable Deep Hypergraph Learning Modeling the Peptide Secondary Structure Prediction
Jiang, Yi, Wang, Ruheng, Feng, Jiuxin, Jin, Junru, Liang, Sirui, Li, Zhongshen, Yu, Yingying, Ma, Anjun, Su, Ran, Zou, Quan, Ma, Qin, Wei, Leyi
Published in Advanced science (01.04.2023)
Published in Advanced science (01.04.2023)
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Journal Article
PLPMpro: Enhancing promoter sequence prediction with prompt-learning based pre-trained language model
Li, Zhongshen, Jin, Junru, Long, Wentao, Wei, Leyi
Published in Computers in biology and medicine (01.09.2023)
Published in Computers in biology and medicine (01.09.2023)
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Journal Article
ExamPle: explainable deep learning framework for the prediction of plant small secreted peptides
Li, Zhongshen, Jin, Junru, Wang, Yu, Long, Wentao, Ding, Yuanhao, Hu, Haiyan, Wei, Leyi
Published in Bioinformatics (Oxford, England) (01.03.2023)
Published in Bioinformatics (Oxford, England) (01.03.2023)
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Journal Article
Rm-LR: A long-range-based deep learning model for predicting multiple types of RNA modifications
Liang, Sirui, Zhao, Yanxi, Jin, Junru, Qiao, Jianbo, Wang, Ding, Wang, Yu, Wei, Leyi
Published in Computers in biology and medicine (01.09.2023)
Published in Computers in biology and medicine (01.09.2023)
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Journal Article
StructuralDPPIV: a novel deep learning model based on atom structure for predicting dipeptidyl peptidase-IV inhibitory peptides
Wang, Ding, Jin, Junru, Li, Zhongshen, Wang, Yu, Fan, Mushuang, Liang, Sirui, Su, Ran, Wei, Leyi
Published in Bioinformatics (Oxford, England) (01.02.2024)
Published in Bioinformatics (Oxford, England) (01.02.2024)
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Journal Article
Accelerating bioactive peptide discovery via mutual information-based meta-learning
He, Wenjia, Jiang, Yi, Jin, Junru, Li, Zhongshen, Zhao, Jiaojiao, Manavalan, Balachandran, Su, Ran, Gao, Xin, Wei, Leyi
Published in Briefings in bioinformatics (17.01.2022)
Published in Briefings in bioinformatics (17.01.2022)
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Journal Article
CoraL: interpretable contrastive meta-learning for the prediction of cancer-associated ncRNA-encoded small peptides
Li, Zhongshen, Jin, Junru, He, Wenjia, Long, Wentao, Yu, Haoqing, Gao, Xin, Nakai, Kenta, Zou, Quan, Wei, Leyi
Published in Briefings in bioinformatics (22.09.2023)
Published in Briefings in bioinformatics (22.09.2023)
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Journal Article
DrugormerDTI: Drug Graphormer for drug–target interaction prediction
Hu, Jiayue, Yu, Wang, Pang, Chao, Jin, Junru, Pham, Nhat Truong, Manavalan, Balachandran, Wei, Leyi
Published in Computers in biology and medicine (01.07.2023)
Published in Computers in biology and medicine (01.07.2023)
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