Workflow Comparison for Label-Free, Quantitative Secretome Proteomics for Cancer Biomarker Discovery: Method Evaluation, Differential Analysis, and Verification in Serum
Piersma, Sander R, Fiedler, Ulrike, Span, Simone, Lingnau, Andreas, Pham, Thang V, Hoffmann, Steffen, Kubbutat, Michael H. G, Jiménez, Connie R
Published in Journal of proteome research (05.04.2010)
Published in Journal of proteome research (05.04.2010)
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Journal Article
Loss of VRK1 alters the nuclear phosphoproteome in the DNA damage response to doxorubicin
Navarro-Carrasco, Elena, Campos-Díaz, Aurora, Monte-Serrano, Eva, Rolfs, Frank, de Goeij-de Haas, Richard, Pham, Thang V., Piersma, Sander R., Jiménez, Connie R., Lazo, Pedro A.
Published in Chemico-biological interactions (01.03.2024)
Published in Chemico-biological interactions (01.03.2024)
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Journal Article
Mycosins Are Required for the Stabilization of the ESX-1 and ESX-5 Type VII Secretion Membrane Complexes
van Winden, Vincent J C, Ummels, Roy, Piersma, Sander R, Jiménez, Connie R, Korotkov, Konstantin V, Bitter, Wilbert, Houben, Edith N G
Published in mBio (18.10.2016)
Published in mBio (18.10.2016)
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Journal Article
The translatome of glioblastoma
Cornelissen, Fleur M G, He, Zhaoren, Ciputra, Edward, de Haas, Richard R, Beumer-Chuwonpad, Ammarina, Noske, David, Vandertop, W Peter, Piersma, Sander R, Jiménez, Connie R, Murre, Cornelis, Westerman, Bart A
Published in Molecular oncology (17.10.2024)
Published in Molecular oncology (17.10.2024)
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Journal Article
EspH is a hypervirulence factor for Mycobacterium marinum and essential for the secretion of the ESX-1 substrates EspE and EspF
Phan, Trang H, van Leeuwen, Lisanne M, Kuijl, Coen, Ummels, Roy, van Stempvoort, Gunny, Rubio-Canalejas, Alba, Piersma, Sander R, Jiménez, Connie R, van der Sar, Astrid M, Houben, Edith N G, Bitter, Wilbert
Published in PLoS pathogens (01.08.2018)
Published in PLoS pathogens (01.08.2018)
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Journal Article
Specific Chaperones for the Type VII Protein Secretion Pathway
Daleke, Maria H., van der Woude, Aniek D., Parret, Annabel H.A., Ummels, Roy, de Groot, A.Marit, Watson, David, Piersma, Sander R., Jiménez, Connie R., Luirink, Joen, Bitter, Wilbert, Houben, Edith N.G.
Published in The Journal of biological chemistry (14.09.2012)
Published in The Journal of biological chemistry (14.09.2012)
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Journal Article
Genome-wide siRNA Screen Identifies the Radiosensitizing Effect of Downregulation of MASTL and FOXM1 in NSCLC
Nagel, Remco, Stigter-van Walsum, Marijke, Buijze, Marijke, van den Berg, Jaap, van der Meulen, Ida H, Hodzic, Jasmina, Piersma, Sander R, Pham, Thang V, Jiménez, Connie R, van Beusechem, Victor W, Brakenhoff, Ruud H
Published in Molecular cancer therapeutics (01.06.2015)
Published in Molecular cancer therapeutics (01.06.2015)
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Journal Article
Whole gel processing procedure for GeLC-MS/MS based proteomics
Piersma, Sander R, Warmoes, Marc O, de Wit, Meike, de Reus, Inge, Knol, Jaco C, Jiménez, Connie R
Published in Proteome science (23.04.2013)
Published in Proteome science (23.04.2013)
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Journal Article
Proteomics of the TRAP-induced platelet releasate
Piersma, Sander R., Broxterman, Henk J., Kapci, Muhammed, de Haas, Richard R., Hoekman, Klaas, Verheul, Henk M.W., Jiménez, Connie R.
Published in Journal of proteomics (15.02.2009)
Published in Journal of proteomics (15.02.2009)
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Journal Article
Colorectal cancer derived organotypic spheroids maintain essential tissue characteristics but adapt their metabolism in culture
Rajcevic, Uros, Knol, Jaco C, Piersma, Sander, Bougnaud, Sébastien, Fack, Fred, Sundlisaeter, Eirik, Søndenaa, Karl, Myklebust, Reidar, Pham, Thang V, Niclou, Simone P, Jiménez, Connie R
Published in Proteome science (11.07.2014)
Published in Proteome science (11.07.2014)
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Journal Article
Peptide-mediated ‘miniprep’ isolation of extracellular vesicles is suitable for high-throughput proteomics
Knol, Jaco C., de Reus, Inge, Schelfhorst, Tim, Beekhof, Robin, de Wit, Meike, Piersma, Sander R., Pham, Thang V., Smit, Egbert F., Verheul, Henk M.W., Jiménez, Connie R.
Published in EuPA open proteomics (01.06.2016)
Published in EuPA open proteomics (01.06.2016)
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Journal Article
Proteomic analysis of cerebrospinal fluid extracellular vesicles: A comprehensive dataset
Chiasserini, Davide, van Weering, Jan R.T., Piersma, Sander R., Pham, Thang V., Malekzadeh, Arjan, Teunissen, Charlotte E., de Wit, Heidi, Jiménez, Connie R.
Published in Journal of proteomics (25.06.2014)
Published in Journal of proteomics (25.06.2014)
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Journal Article
Essential Role of the ESX-5 Secretion System in Outer Membrane Permeability of Pathogenic Mycobacteria
Ates, Louis S, Ummels, Roy, Commandeur, Susanna, van de Weerd, Robert, van der Weerd, Robert, Sparrius, Marion, Weerdenburg, Eveline, Alber, Marina, Kalscheuer, Rainer, Piersma, Sander R, Abdallah, Abdallah M, Abd El Ghany, Moataz, Abdel-Haleem, Alyaa M, Pain, Arnab, Jiménez, Connie R, Bitter, Wilbert, Houben, Edith N G
Published in PLoS genetics (01.05.2015)
Published in PLoS genetics (01.05.2015)
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Journal Article
High-dose intravenous vitamin C, a promising multi-targeting agent in the treatment of cancer
Böttger, Franziska, Vallés-Martí, Andrea, Cahn, Loraine, Jimenez, Connie R
Published in Journal of Experimental and Clinical Cancer Research (30.10.2021)
Published in Journal of Experimental and Clinical Cancer Research (30.10.2021)
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Journal Article
Book Review
Composition of the type VII secretion system membrane complex
Houben, Edith N. G., Bestebroer, Jovanka, Ummels, Roy, Wilson, Louis, Piersma, Sander R., Jiménez, Connie R., Ottenhoff, Tom H. M., Luirink, Joen, Bitter, Wilbert
Published in Molecular microbiology (01.10.2012)
Published in Molecular microbiology (01.10.2012)
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Journal Article
Urinary exosomal proteins as (pan‐)cancer biomarkers: insights from the proteome
Erozenci, Leyla Ayse, Böttger, Franziska, Bijnsdorp, Irene V., Jimenez, Connie R.
Published in FEBS letters (01.07.2019)
Published in FEBS letters (01.07.2019)
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Journal Article