The NCI Genomic Data Commons as an engine for precision medicine
Jensen, Mark A., Ferretti, Vincent, Grossman, Robert L., Staudt, Louis M.
Published in Blood (27.07.2017)
Published in Blood (27.07.2017)
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Journal Article
Kidney-resident macrophages promote a proangiogenic environment in the normal and chronically ischemic mouse kidney
Puranik, Amrutesh S., Leaf, Irina A., Jensen, Mark A., Hedayat, Ahmad F., Saad, Ahmad, Kim, Ki-Wook, Saadalla, Abdulrahman M., Woollard, John R., Kashyap, Sonu, Textor, Stephen C., Grande, Joseph P., Lerman, Amir, Simari, Robert D., Randolph, Gwendalyn J., Duffield, Jeremy S., Lerman, Lilach O.
Published in Scientific reports (17.09.2018)
Published in Scientific reports (17.09.2018)
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Journal Article
The Evolutionary Divergence of Shiga Toxin-Producing Escherichia coli Is Reflected in Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Spacer Composition
Yin, Shuang, Jensen, Mark A, Bai, Jiawei, Debroy, Chitrita, Barrangou, Rodolphe, Dudley, Edward G
Published in Applied and Environmental Microbiology (01.09.2013)
Published in Applied and Environmental Microbiology (01.09.2013)
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Journal Article
Single-cell expression quantitative trait loci (eQTL) analysis of SLE-risk loci in lupus patient monocytes
Ghodke-Puranik, Yogita, Jin, Zhongbo, Zimmerman, Kip D, Ainsworth, Hannah C, Fan, Wei, Jensen, Mark A, Dorschner, Jessica M, Vsetecka, Danielle M, Amin, Shreyasee, Makol, Ashima, Ernste, Floranne, Osborn, Thomas, Moder, Kevin, Chowdhary, Vaidehi, Langefeld, Carl D, Niewold, Timothy B
Published in Arthritis research & therapy (30.11.2021)
Published in Arthritis research & therapy (30.11.2021)
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Journal Article
Autoantibody repertoire characterization provides insight into the pathogenesis of monogenic and polygenic autoimmune diseases
Clarke, Thomas, Du, Pan, Kumar, Satyendra, Okitsu, Shinji L, Schuette, Mark, An, Qi, Zhang, Jinyang, Tzvetkov, Evgeni, Jensen, Mark A, Niewold, Timothy B, Ferre, Elise M N, Nardone, Julie, Lionakis, Michail S, Vlach, Jaromir, DeMartino, Julie, Bender, Andrew T
Published in Frontiers in immunology (10.02.2023)
Published in Frontiers in immunology (10.02.2023)
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Journal Article
A Practical Guide to The Cancer Genome Atlas (TCGA)
Wang, Zhining, Jensen, Mark A, Zenklusen, Jean Claude
Published in Methods in molecular biology (Clifton, N.J.) (2016)
Published in Methods in molecular biology (Clifton, N.J.) (2016)
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Journal Article
Distinct Single Cell Gene Expression in Peripheral Blood Monocytes Correlates With Tumor Necrosis Factor Inhibitor Treatment Response Groups Defined by Type I Interferon in Rheumatoid Arthritis
Wampler Muskardin, Theresa L, Fan, Wei, Jin, Zhongbo, Jensen, Mark A, Dorschner, Jessica M, Ghodke-Puranik, Yogita, Dicke, Betty, Vsetecka, Danielle, Wright, Kerry, Mason, Thomas, Persellin, Scott, Michet, Clement J, Davis, 3rd, John M, Matteson, Eric, Niewold, Timothy B
Published in Frontiers in immunology (16.07.2020)
Published in Frontiers in immunology (16.07.2020)
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Journal Article
HIV-specific probabilistic models of protein evolution
Nickle, David C, Heath, Laura, Jensen, Mark A, Gilbert, Peter B, Mullins, James I, Kosakovsky Pond, Sergei L
Published in PloS one (06.06.2007)
Published in PloS one (06.06.2007)
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Journal Article
BIO::Phylo-phyloinformatic analysis using perl
Vos, Rutger A, Caravas, Jason, Hartmann, Klaas, Jensen, Mark A, Miller, Chase
Published in BMC bioinformatics (27.02.2011)
Published in BMC bioinformatics (27.02.2011)
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Journal Article
Improved Coreceptor Usage Prediction and Genotypic Monitoring of R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency Virus Type 1 env V3 Loop Sequences
Jensen, Mark A, Li, Fu-Sheng, van 't Wout, Angélique B, Nickle, David C, Shriner, Daniel, He, Hong-Xia, McLaughlin, Sherry, Shankarappa, Raj, Margolick, Joseph B, Mullins, James I
Published in Journal of Virology (01.12.2003)
Published in Journal of Virology (01.12.2003)
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Journal Article
Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA
Swenson, Luke C, Moores, Andrew, Low, Andrew J, Thielen, Alexander, Dong, Winnie, Woods, Conan, Jensen, Mark A, Wynhoven, Brian, Chan, Dennison, Glascock, Christopher, Harrigan, P Richard
Published in Journal of acquired immune deficiency syndromes (1999) (15.08.2010)
Published in Journal of acquired immune deficiency syndromes (1999) (15.08.2010)
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Journal Article
Changes in Human Immunodeficiency Virus Type 1 Fitness and Genetic Diversity during Disease Progression
TROYER, Ryan M, COLLINS, Kalonji R, VANHAM, Guido, ARTS, Eric J, ABRAHA, Awet, FRAUNDORF, Erika, MOORE, Dawn M, KRIZAN, Randall W, TOOSSI, Zahra, COLEBUNDERS, Robert L, JENSEN, Mark A, MULLINS, James I
Published in Journal of Virology (01.07.2005)
Published in Journal of Virology (01.07.2005)
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Journal Article
Targeting of Myelin Protein Zero in a Spontaneous Autoimmune Polyneuropathy
Kim, Hye-Jung, Jung, Cha-Gyun, Jensen, Mark A, Dukala, Danuta, Soliven, Betty
Published in The Journal of immunology (1950) (15.12.2008)
Published in The Journal of immunology (1950) (15.12.2008)
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Journal Article
Coping with viral diversity in HIV vaccine design
Nickle, David C, Rolland, Morgane, Jensen, Mark A, Pond, Sergei L Kosakovsky, Deng, Wenjie, Seligman, Mark, Heckerman, David, Mullins, James I, Jojic, Nebojsa
Published in PLoS computational biology (01.04.2007)
Published in PLoS computational biology (01.04.2007)
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Journal Article
Intelligence Authorization Acts: Their Impact on the Intelligence Community
Jensen, Mark A.
Published in International journal of intelligence and counterintelligence (02.04.2024)
Published in International journal of intelligence and counterintelligence (02.04.2024)
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Journal Article
Type I Interferon Predicts an Alternate Immune System Phenotype in Systemic Lupus Erythematosus
Thanarajasingam, Uma, Muppirala, Anoohya N., Jensen, Mark A., Ghodke‐Puranik, Yogita, Dorschner, Jessica M., Vsetecka, Danielle M., Amin, Shreyasee, Makol, Ashima, Ernste, Floranne, Osborn, Thomas, Moder, Kevin, Chowdhary, Vaidehi, Niewold, Timothy B.
Published in ACR open rheumatology (01.10.2019)
Published in ACR open rheumatology (01.10.2019)
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Journal Article
Single-cell gene expression patterns in lupus monocytes independently indicate disease activity, interferon and therapy
Jin, Zhongbo, Fan, Wei, Jensen, Mark A, Dorschner, Jessica M, Bonadurer, George F, Vsetecka, Danielle M, Amin, Shreyasee, Makol, Ashima, Ernste, Floranne, Osborn, Thomas, Moder, Kevin, Chowdhary, Vaidehi, Niewold, Timothy B
Published in Lupus science & medicine (01.01.2017)
Published in Lupus science & medicine (01.01.2017)
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Journal Article
Reconstruction and Function of Ancestral Center-of-Tree Human Immunodeficiency Virus Type 1 Proteins
ROLLAND, Morgane, JENSEN, Mark A, NICKLE, David C, JIAN YAN, LEARN, Gerald H, HEATH, Laura, WEINER, David, MULLINS, James I
Published in Journal of Virology (01.08.2007)
Published in Journal of Virology (01.08.2007)
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Journal Article